ViewGene
Locus Name:
GeneID:
Location:

GeneID:2609
TrivialName: PA14_37910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37910
PAO1 Ortholog Locus:PA2056
Sequence Length:903
Protein Length:300
Start: 3384506
Stop: 3383604
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05444.1|AE004632_3 (AE004632) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 298/300 (99%), Positives = 298/300 (99%)
Sequence:
ATGGACCTGAATGCCGTCAAGTTGCTCGCCCGCGTGGCCGAGACCCGTAGCTTCACCCAGGCCGCCGTTTCC
CTCGGTCTGACCCAGTCCGGCCTGTCGCGCGCCATCGGCCGGCTGGAAGCCGAACTCGGCGTGCGTCTGCTG
CACCGCACCACCCGCAGCGTCAGCCTGACCCCGGACGGCCAACTGTTCTACGAGCGCTGCGCACCCTTGCTG
GCGGAGCTGGAGGAAGTCGAGAAGTTGCTGGTGGACCGCCAGTGCGCGCCGAGCGGTCCGCTGAAGATCACC
ACCCCGCAGGCGCTCGGGCGGATCGTGATCATGCCGGTGCTGCGCGAACTGACCCGGCGCTACCCGCAATTG
CAGATCGAGGCGGCGATGACCGATCGCCTGGTCGACCTCACCGAGGAAGGCTTCGACGCCGCCGTGCGTCTC
GGTCGGGTGGGCGACGTGCGCCTGATCGCCCGGCCATTGGCGGCGTTGCGCTGGGTCACGGTGGCGTCGCCG
GAATACCTGCGCAGTCACGGCACGCCGGAGCGCCTGGAGCAACTCGCCGGGCACAACTGCCCGACGGTGCGC
GACCTGCACACCGGCAAGCTGCTGGAATGGCAGTTCCAGCGCGACGGCCAGCCGCTGAGCCTGGCGGTGCGC
GGCGACCTGGTGCTGGACGTGGCCGACGCGCTGGTCGACGCGGCGCTGGTCGGCCAGGGCATCGTCCAGGTG
ATGGGCTTCATGGCCGAGGAGGCGATCCGCCGGCGTCGACTGGTACGCATCCTCCAGCCGTTCGAACCGCCG
CTGTGCCCGGTGTCGCTGATCTACCCGCCGTCGCGGCAGTGCTCGCTGAAGATCGGCGCGCTCTACGAGGAA
CTGAAGAGCGCGCACTGGTGCGGGGCGCTGACGTACTGA
Translation:
MDLNAVKLLARVAETRSFTQAAVSLGLTQSGLSRAIGRLEAELGVRLLHRTTRSVSLTPDGQLFYERCAPLL
AELEEVEKLLVDRQCAPSGPLKITTPQALGRIVIMPVLRELTRRYPQLQIEAAMTDRLVDLTEEGFDAAVRL
GRVGDVRLIARPLAALRWVTVASPEYLRSHGTPERLEQLAGHNCPTVRDLHTGKLLEWQFQRDGQPLSLAVR
GDLVLDVADALVDAALVGQGIVQVMGFMAEEAIRRRRLVRILQPFEPPLCPVSLIYPPSRQCSLKIGALYEE
LKSAHWCGALTY*
AnnotationID:2617GeneID:2609
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:24
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA2056
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAG21824.1| (AY008288) putative transcriptional regulator CeoR [Burkholderia
           cepacia]
          Length = 334

 Score =  215 bits (547), Expect = 3e-55
 Identities = 110/280 (39%), Positives = 168/280 (60%)

>gb|AAO56252.1| (AE016865) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 305

 Score =  203 bits (517), Expect = 9e-52
 Identities = 111/279 (39%), Positives = 161/279 (57%)








 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  98.3% aligned
Score =  137 bits (345), Expect = 2e-33
Identities = 100/300 (33%), Positives = 139/300 (46%), Gaps = 14/300 (4%)








   
Genomic Context:






   
Comment:


















    ReferenceID:5221




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22366




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32648




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2609_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2609
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4318
                           PA2056_tr
                           translation of PA2056
                           300
                           99.33
                           99.33
                           0
                           1506.0
     

     
     
126813
                           gb|AAG05444.1|AE004632_3
                           (AE004632) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           300
                           99.33
                           99.33
                           0
                           1506.0
     

     






      

          
GC ORFID: 45611How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2056Glimmer Score: 

          
Start: 1569407Stop: 1570309

          
Length: 903


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2056 translation of PA2056Homolog Bit Score 584.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8132 (ORF: BLASTX 211.0), t_PA2056 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACCTGAATGCCGTCAAGTTGCTCGCCCGCGTGGCCGAGACCCGTAGCTTCACCCAGGCCGCCGTTTCC 
CTCGGTCTGACCCAGTCCGGCCTGTCGCGCGCCATCGGCCGGCTGGAAGCCGAACTCGGCGTGCGTCTGCTG 
CACCGCACCACCCGCAGCGTCAGCCTGACCCCGGACGGCCAACTGTTCTACGAGCGCTGCGCACCCTTGCTG 
GCGGAGCTGGAGGAAGTCGAGAAGTTGCTGGTGGACCGCCAGTGCGCGCCGAGCGGTCCGCTGAAGATCACC 
ACCCCGCAGGCGCTCGGGCGGATCGTGATCATGCCGGTGCTGCGCGAACTGACCCGGCGCTACCCGCAATTG 
CAGATCGAGGCGGCGATGACCGATCGCCTGGTCGACCTCACCGAGGAAGGCTTCGACGCCGCCGTGCGTCTC 
GGTCGGGTGGGCGACGTGCGCCTGATCGCCCGGCCATTGGCGGCGTTGCGCTGGGTCACGGTGGCGTCGCCG 
GAATACCTGCGCAGTCACGGCACGCCGGAGCGCCTGGAGCAACTCGCCGGGCACAACTGCCCGACGGTGCGC 
GACCTGCACACCGGCAAGCTGCTGGAATGGCAGTTCCAGCGCGACGGCCAGCCGCTGAGCCTGGCGGTGCGC 
GGCGACCTGGTGCTGGACGTGGCCGACGCGCTGGTCGACGCGGCGCTGGTCGGCCAGGGCATCGTCCAGGTG 
ATGGGCTTCATGGCCGAGGAGGCGATCCGCCGGCGTCGACTGGTACGCATCCTCCAGCCGTTCGAACCGCCG 
CTGTGCCCGGTGTCGCTGATCTACCCGCCGTCGCGGCAGTGCTCGCTGAAGATCGGCGCGCTCTACGAGGAA 
CTGAAGAGCGCGCACTGGTGCGGGGCGCTGACGTACTGA