ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2607

TrivialName: PA14_45510

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_45510

PAO1 Ortholog Locus: PA1463

Sequence Length: 891

Protein Length: 296

Start: 4051063

Stop: 4050173

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04852.1|AE004576_1 (AE004576) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 291/296 (98%), Positives = 291/296 (98%)

Sequence:

ATGAGCGCCGCCACCGCCACCCGTTCGCAACTGGCCTTGCAGTCCTACCTGGATGCGTTGCTCCAGGAGGCC
ACTTTCGAGGACCTGGAACCTCCCGTCGAGACGCCGCCAGCGCCTGCGCCCGCGCCGTTGAAGCCTGTGGCG
CTGGCGGTCGCCGAAGTGGCGACACCGGCCCCGACGCTGGAAACGCTGCCGGTCGACCACGGGTTCGACGAG
TTCGAGGCCGCGGTGCTCGAGGAGCAGGTCCGCGATGCGCGCCTGGTTCCGCCGGCGCCGGCGGCCCTGCTC
GACGAACCGACGACGTTGCGCGAGCTGCCGGTCGAGCCACGGCCCCACGAGGTCATCGAACTGCGCGTGCCG
AGCGCCCCGGCGAGCGCCAGCGAGCCGGCGCTGCTCGACCTGCCGCTGCTCGACGACGGTCGTCCGGCCTGG
GCGGCGGAGCCCTTCGAGTGCCTGCTGTTCGACGTCGCTGGGCTGACCCTGGCGGTGCCGCTGGTGTGCCTC
GGCTCGATCTATCCGCTGGAGAACCAGGAACTGACCCCGTTGTTCGGCCAGCCCGACTGGTTCCTCGGCATC
CTGCCGTCGCAGGCGGGCAACCTGAAGGTGCTGGACACCGCACGCTGGGTGATGCCCGAACGCTACCGCGAC
GACTATCGCGACGGCCTCAAGTACGTGATCTCGGTCCAGGGCTACGAGTGGGGGCTGGCGGTGCACCAGGTG
AGCCGCTCGATCCGCCTCGACCCGGCCGAGGTGAAATGGCGCAGCCAGCGTAGCCAGCGGCCCTGGTTGGCC
GGCACGGTCATCGAACACATGTGTGCGCTGCTGGATGTGGCGGCGCTCGCCGAACTGATCGCCAGCGGCGCC
GTCAAGCGCCTGCACGGCGACCATTGA

Translation:

MSAATATRSQLALQSYLDALLQEATFEDLEPPVETPPAPAPAPLKPVALAVAEVATPAPTLETLPVDHGFDE
FEAAVLEEQVRDARLVPPAPAALLDEPTTLRELPVEPRPHEVIELRVPSAPASASEPALLDLPLLDDGRPAW
AAEPFECLLFDVAGLTLAVPLVCLGSIYPLENQELTPLFGQPDWFLGILPSQAGNLKVLDTARWVMPERYRD
DYRDGLKYVISVQGYEWGLAVHQVSRSIRLDPAEVKWRSQRSQRPWLAGTVIEHMCALLDVAALAELIASGA
VKRLHGDH*

AnnotationID:2615 GeneID:2607

AnnotatorUID: diggins

Modification Date/Time: 2005-05-27 08:08:48

Gene Name:

Confidence Code: 3

GeneProduct: putative CheW domain protein

Cell Localization: (1) Cytoplasmic

Synonyms: PA1463

Cell Localization Confidence Code: 3

MolecularFunction:

Functional Category: (10) Chemotaxis

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam01584,cd00588,smart00260

Secondary Functional Category(ies): signal transduction mechanisms

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAO55505.1| (AE016862) CheW domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 295

 Score =  325 bits (834), Expect = 1e-88
 Identities = 183/301 (60%), Positives = 204/301 (67%), Gaps = 38/301 (12%)

>gb|AAN69912.1|AE016630_3 (AE016790) CheW domain protein [Pseudomonas putida KT2440]
          Length = 298

 Score =  323 bits (827), Expect = 1e-87
 Identities = 183/306 (59%), Positives = 205/306 (66%), Gaps = 35/306 (11%)

Structural Features:

pfam01584, CheW, CheW-like domain. 
CD-Length = 141 residues,  99.3% aligned
Score = 90.3 bits (224), Expect = 3e-19
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

cd00588, CheW_like, CheW-like domain.
CD-Length = 136 residues,  99.3% aligned
Score = 71.8 bits (176), Expect = 1e-13
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 7/137 (5%)

smart00260, CheW, Two component signalling adaptor domain
CD-Length = 138 residues, 100.0% aligned
Score = 67.9 bits (166), Expect = 1e-12
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 8/141 (5%)

Genomic Context:

Comment:

ReferenceID:5217

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:22362

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37368

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 2607_cdd.html

URL:

Homologs By Global Alignment

Gene ID:2607

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

4316 PA1463_tr translation of PA1463 296 98.31 98.31 0 1505.0

126752 gb|AAG04852.1|AE004576_1 (AE004576) hypothetical protein PA1463 [Pseudomonas aeruginosa PAO1] 296 98.31 98.31 0 1505.0

126753 dbj|BAA33554.1| (AB012767) ORF4 [Pseudomonas aeruginosa] 296 98.31 98.31 0 1505.0

126756 gb|AAN69912.1|AE016630_3 (AE016790) CheW domain protein [Pseudomonas putida KT2440] 338 57.98 62.72 82 875.0

126754 gb|AAC08069.1| (AF031898) unknown [Pseudomonas putida] 334 57.78 63.17 75 876.0

GC ORFID: `45609`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1463`	Glimmer Score:
Start: `902846`	Stop: `903736`
Length: `891`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1463 translation of PA1463`	Homolog Bit Score `584.0`
Other Homologs: `psyr_15may02_Scaffold8_revised_gene7947 (ORF: BLASTX 327.0), t_PA1463 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCGCCGCCACCGCCACCCGTTCGCAACTGGCCTTGCAGTCCTACCTGGATGCGTTGCTCCAGGAGGCC ACTTTCGAGGACCTGGAACCTCCCGTCGAGACGCCGCCAGCGCCTGCGCCCGCGCCGTTGAAGCCTGTGGCG CTGGCGGTCGCCGAAGTGGCGACACCGGCCCCGACGCTGGAAACGCTGCCGGTCGACCACGGGTTCGACGAG TTCGAGGCCGCGGTGCTCGAGGAGCAGGTCCGCGATGCGCGCCTGGTTCCGCCGGCGCCGGCGGCCCTGCTC GACGAACCGACGACGTTGCGCGAGCTGCCGGTCGAGCCACGGCCCCACGAGGTCATCGAACTGCGCGTGCCG AGCGCCCCGGCGAGCGCCAGCGAGCCGGCGCTGCTCGACCTGCCGCTGCTCGACGACGGTCGTCCGGCCTGG GCGGCGGAGCCCTTCGAGTGCCTGCTGTTCGACGTCGCTGGGCTGACCCTGGCGGTGCCGCTGGTGTGCCTC GGCTCGATCTATCCGCTGGAGAACCAGGAACTGACCCCGTTGTTCGGCCAGCCCGACTGGTTCCTCGGCATC CTGCCGTCGCAGGCGGGCAACCTGAAGGTGCTGGACACCGCACGCTGGGTGATGCCCGAACGCTACCGCGAC GACTATCGCGACGGCCTCAAGTACGTGATCTCGGTCCAGGGCTACGAGTGGGGGCTGGCGGTGCACCAGGTG AGCCGCTCGATCCGCCTCGACCCGGCCGAGGTGAAATGGCGCAGCCAGCGTAGCCAGCGGCCCTGGTTGGCC GGCACGGTCATCGAACACATGTGTGCGCTGCTGGATGTGGCGGCGCTCGCCGAACTGATCGCCAGCGGCGCC GTCAAGCGCCTGCACGGCGACCATTGA