ViewGene
Locus Name:
GeneID:
Location:

GeneID:2606
TrivialName: PA14_50810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50810
PAO1 Ortholog Locus:PA1048
Sequence Length:882
Protein Length:293
Start: 4514522
Stop: 4513641
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04437.1|AE004537_2 (AE004537) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 292/293 (99%), Positives = 292/293 (99%)
Sequence:
ATGAAACTGCTTAAGACCTCGACGCTTCTTCTCTGCATGACCGCCTCTGGCTGCAGCTATTTCCAGACCCAG
GATGCTTCCTCGCAGCCAGCCAAGGCTCCGGCCGAGCAGGCTTCCAGCCATTCATGGTGGCCGTTCGGCAAG
GACGACGGACAGACCGTCGCCAAGCAGGCCACGGAACAGAAGGCCGAAGCCGAGCATGTCGGCTCCAGCCAC
TGGTGGTGGCCGTTCGGCAAGGACGAAGGCGGTCGGGACGTAGCCGCCAAGGCTGCGGAGCAGAAGGCCGAG
ATCGCCGCGGCGAAGAAAGAAGTCGCCGCCGCAGCCGAGCCGAAGGCCGCCAACCCCTGGTGGTGGCCGTTC
GGCGCCAGCTCGGCGAGCAAGGCGTCGGGCAAGCCGGCACTGGTCCAGCAGAAGGTCACCAAGGAGTGGCTG
GATACTCATGAGAAAGCCCTGCGCGAAGCGATCGCCGGTAGCGAGTTCACCCTCGAACGCCGCGACAACGCA
TTGATCGTCATCGCCCCCGCCGACTACTCGTTCAATCCCAAGCGCCACACCATGCTGATGCCGATCACCCTC
AACCCGCTGGGCAAGGTCGCCAAGATGGCCCAGGCCGATCCGCAGAGCGGTATCCTGGTGCTCGGCCATACC
GACAGCACCGGCAGCAAGGCGGTCAACGACAAGCTGAGCTTCGAGCGTGCCCAGTCGGTGGCGGCGATCTTC
CGCCTCAGCGGCCTGAAAGGCGATCAATTGCGCCTGAAGGGGGTCGGTTCCGACATGCCGCGCGCGGACAAC
GCCAGCGCCGCCGGCCGCGCCCAGAACCGTCGCGTCGAAGTGCTCTATACCCAGCGCGCCAGCCTGCTGTCC
CTGGCCCAGGGCAACTGA
Translation:
MKLLKTSTLLLCMTASGCSYFQTQDASSQPAKAPAEQASSHSWWPFGKDDGQTVAKQATEQKAEAEHVGSSH
WWWPFGKDEGGRDVAAKAAEQKAEIAAAKKEVAAAAEPKAANPWWWPFGASSASKASGKPALVQQKVTKEWL
DTHEKALREAIAGSEFTLERRDNALIVIAPADYSFNPKRHTMLMPITLNPLGKVAKMAQADPQSGILVLGHT
DSTGSKAVNDKLSFERAQSVAAIFRLSGLKGDQLRLKGVGSDMPRADNASAAGRAQNRRVEVLYTQRASLLS
LAQGN*
AnnotationID:2614GeneID:2606
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 14:02:48
Gene Name:
Confidence Code:3
GeneProduct:probable outer membrane protein precursor
Cell Localization:()
Synonyms:PA1048
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2885
Secondary Functional Category(ies):Transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated 
(lipo)proteins [Cell envelope biogenesis, outer membrane]
      CD-Length = 190 residues,  91.1% aligned
      Score =  105 bits (263), Expect = 6e-24






   
Genomic Context:






   
Comment:


















    ReferenceID:5215




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22360




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2606
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4315
                           PA1048_tr
                           translation of PA1048
                           293
                           99.65
                           99.65
                           0
                           1505.0
     

     
     
126750
                           gb|AAG04437.1|AE004537_2
                           (AE004537) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           293
                           99.65
                           99.65
                           0
                           1505.0
     

     
     
126751
                           gb|AAN66753.1|AE016303_8
                           (AE016778) OmpA family protein [Pseudomonas putida KT2440]
                           395
                           32.40
                           42.53
                           153
                           565.0
     

     






      

          
GC ORFID: 45608How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1048Glimmer Score: 

          
Start: 439386Stop: 440267

          
Length: 882


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1048 translation of PA1048Homolog Bit Score 584.0

          
Other Homologs:  t_PA1048 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACTGCTTAAGACCTCGACGCTTCTTCTCTGCATGACCGCCTCTGGCTGCAGCTATTTCCAGACCCAG 
GATGCTTCCTCGCAGCCAGCCAAGGCTCCGGCCGAGCAGGCTTCCAGCCATTCATGGTGGCCGTTCGGCAAG 
GACGACGGACAGACCGTCGCCAAGCAGGCCACGGAACAGAAGGCCGAAGCCGAGCATGTCGGCTCCAGCCAC 
TGGTGGTGGCCGTTCGGCAAGGACGAAGGCGGTCGGGACGTAGCCGCCAAGGCTGCGGAGCAGAAGGCCGAG 
ATCGCCGCGGCGAAGAAAGAAGTCGCCGCCGCAGCCGAGCCGAAGGCCGCCAACCCCTGGTGGTGGCCGTTC 
GGCGCCAGCTCGGCGAGCAAGGCGTCGGGCAAGCCGGCACTGGTCCAGCAGAAGGTCACCAAGGAGTGGCTG 
GATACTCATGAGAAAGCCCTGCGCGAAGCGATCGCCGGTAGCGAGTTCACCCTCGAACGCCGCGACAACGCA 
TTGATCGTCATCGCCCCCGCCGACTACTCGTTCAATCCCAAGCGCCACACCATGCTGATGCCGATCACCCTC 
AACCCGCTGGGCAAGGTCGCCAAGATGGCCCAGGCCGATCCGCAGAGCGGTATCCTGGTGCTCGGCCATACC 
GACAGCACCGGCAGCAAGGCGGTCAACGACAAGCTGAGCTTCGAGCGTGCCCAGTCGGTGGCGGCGATCTTC 
CGCCTCAGCGGCCTGAAAGGCGATCAATTGCGCCTGAAGGGGGTCGGTTCCGACATGCCGCGCGCGGACAAC 
GCCAGCGCCGCCGGCCGCGCCCAGAACCGTCGCGTCGAAGTGCTCTATACCCAGCGCGCCAGCCTGCTGTCC 
CTGGCCCAGGGCAACTGA