ViewGene

Locus Name:
GeneID:
Location:

GeneID:2604
TrivialName: PA14_07700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07700
PAO1 Ortholog Locus:PA0590
Sequence Length:852
Protein Length:283
Start: 662979
Stop: 662128
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03979.1|AE004495_3 (AE004495) bis(5'-nucleosyl)-tetraphosphatase [Pseudomonas aeruginosa PAO1]
Identities = 283/283 (100%), Positives = 283/283 (100%)
Sequence:
ATGGCGGTCTACGCGGTAGGCGACCTGCAGGGTTGCCTGGATCCCCTGAAATGCCTGCTGGAGCGCGTCGCC
TTCGACCCGGCCAAGGACCGCCTGTGGCTGGTCGGCGACCTGGTCAACCGCGGCCCGCAGTCCCTGGAGACG
CTGCGCTTCCTCTATGCCATGCGCGAGTCGGTGGTCAGCGTCCTGGGCAACCACGACCTGCACCTGCTGGCG
GTGGCGCACAAGTCCGAGCGCCTGAAGAAGTCCGACACGCTGCGGGAAATCCTCGAGGCGCCGGACCGCGAG
CCACTGCTCGACTGGCTGCGTCGCCTGCCGCTGCTGCACTACGACGAACAACGCAAGGTCGCCCTGGTGCAT
GCCGGCATCCCCCCGCAGTGGAGCCTGGAGAAAGCCCGCCTGCGCGCAGCCGAGGTGGAGCAAGCATTGCGC
GACGACCAGCGCCTGCCGCTGTTCCTCGACGGCATGTACGGCAACGAGCCGGCCAAGTGGGACAAGAAGCTG
CATGGCATCGACCGCCTGAGGGTGATCACCAACTACTTCACCCGCATGCGTTTCTGCACCGAAGATGGCAAG
CTCGACCTGAAGAGCAAGGAAGGCCTCGACACCGCGCCGCCCGGCTACGCCCCCTGGTTCAGCTTCCCTTCG
CGCAAGACCCGCGGCGAGAAGATCATCTTCGGCCACTGGGCGGCCCTCGAAGGCCACTGCGACGAGCCCGGC
CTGTTCGCCCTGGATACCGGCTGCGTCTGGGGCGCGCGGATGACCCTGCTGAACGTCGACAGCGGCGAACGC
CTGAGCTGCGATTGCGCCGAACAGCGCGCGCCGGCCAGACCCGCCGCCACGCCCGCATGA
Translation:
MAVYAVGDLQGCLDPLKCLLERVAFDPAKDRLWLVGDLVNRGPQSLETLRFLYAMRESVVSVLGNHDLHLLA
VAHKSERLKKSDTLREILEAPDREPLLDWLRRLPLLHYDEQRKVALVHAGIPPQWSLEKARLRAAEVEQALR
DDQRLPLFLDGMYGNEPAKWDKKLHGIDRLRVITNYFTRMRFCTEDGKLDLKSKEGLDTAPPGYAPWFSFPS
RKTRGEKIIFGHWAALEGHCDEPGLFALDTGCVWGARMTLLNVDSGERLSCDCAEQRAPARPAATPA*
AnnotationID:2612GeneID:2604
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 09:09:57
Gene Name:apaH
Confidence Code:2
GeneProduct:bis(5'-nucleosyl)-tetraphosphatase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:diadenosine tetraphosphatase
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:3.6.1.41
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54091.1| (AE016857) bis(5'-nucleosyl)-tetraphosphatase, symmetrical
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 300

 Score =  429 bits (1103), Expect = e-120
 Identities = 203/269 (75%), Positives = 231/269 (85%)

>gb|AAN66030.1|AE016232_3 (AE016775) bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
           [Pseudomonas putida KT2440]
          Length = 288

 Score =  419 bits (1078), Expect = e-117
 Identities = 203/281 (72%), Positives = 228/281 (81%), Gaps = 3/281 (1%)

>gb|AAP15592.1| (AE016978) diadenosine tetraphosphatase [Shigella flexneri 2a str.
           2457T]
          Length = 280

 Score =  272 bits (696), Expect = 1e-72
 Identities = 135/257 (52%), Positives = 166/257 (64%), Gaps = 1/257 (0%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:5211
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22356
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33876
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2604_cdd.html
URL:
ReferenceID:35272
Author/Investigator(s): Blanchin-Roland S, Blanquet S, Schmitter JM, Fayat G.
Title: The gene for Escherichia coli diadenosine tetraphosphatase is located immediately clockwise to folA and forms an operon with ksgA.
PubMed: 3031429
MedLine:
Source:
Mol Gen Genet. 1986 Dec;205(3):515-22.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3031429
ReferenceID:35273
Author/Investigator(s): Roa BB, Connolly DM, Winkler ME.
Title: Overlap between pdxA and ksgA in the complex pdxA-ksgA-apaG-apaH operon of Escherichia coli K-12.
PubMed: 2670894
MedLine:
Source:
J Bacteriol. 1989 Sep;171(9):4767-77.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2670894
Homologs By Global Alignment
Gene ID:2604

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4313 PA0590_tr translation of PA0590 283 99.99 99.99 0 1511.0
126706 gb|AAG03979.1|AE004495_3 (AE004495) bis(5'-nucleosyl)-tetraphosphatase [Pseudomonas aeruginosa PAO1] 283 99.99 99.99 0 1511.0
126708 gb|AAN66030.1|AE016232_3 (AE016775) bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Pseudomonas putida KT2440] 288 70.48 79.16 5 1076.0
126707 gb|AAO54091.1| (AE016857) bis(5'-nucleosyl)-tetraphosphatase, symmetrical [Pseudomonas syringae pv. tomato str. DC3000] 300 69.00 78.66 17 1097.0
126715 dbj|BAB96617.1| (D10483) Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) (EC 3.6.1.41) [Escherichia coli] 290 48.62 59.31 17 693.0
GC ORFID: 45606How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0590Glimmer Score:
Start: 6464322Stop: 6463471
Length: 852
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0590 translation of PA0590Homolog Bit Score 586.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6757 (ORF: BLASTX 425.0), t_PA0590 (ORF: GLIMMER)
GC ORF Sequence
ATGGCGGTCTACGCGGTAGGCGACCTGCAGGGTTGCCTGGATCCCCTGAAATGCCTGCTGGAGCGCGTCGCC
TTCGACCCGGCCAAGGACCGCCTGTGGCTGGTCGGCGACCTGGTCAACCGCGGCCCGCAGTCCCTGGAGACG
CTGCGCTTCCTCTATGCCATGCGCGAGTCGGTGGTCAGCGTCCTGGGCAACCACGACCTGCACCTGCTGGCG
GTGGCGCACAAGTCCGAGCGCCTGAAGAAGTCCGACACGCTGCGGGAAATCCTCGAGGCGCCGGACCGCGAG
CCACTGCTCGACTGGCTGCGTCGCCTGCCGCTGCTGCACTACGACGAACAACGCAAGGTCGCCCTGGTGCAT
GCCGGCATCCCCCCGCAGTGGAGCCTGGAGAAAGCCCGCCTGCGCGCAGCCGAGGTGGAGCAAGCATTGCGC
GACGACCAGCGCCTGCCGCTGTTCCTCGACGGCATGTACGGCAACGAGCCGGCCAAGTGGGACAAGAAGCTG
CATGGCATCGACCGCCTGAGGGTGATCACCAACTACTTCACCCGCATGCGTTTCTGCACCGAAGATGGCAAG
CTCGACCTGAAGAGCAAGGAAGGCCTCGACACCGCGCCGCCCGGCTACGCCCCCTGGTTCAGCTTCCCTTCG
CGCAAGACCCGCGGCGAGAAGATCATCTTCGGCCACTGGGCGGCCCTCGAAGGCCACTGCGACGAGCCCGGC
CTGTTCGCCCTGGATACCGGCTGCGTCTGGGGCGCGCGGATGACCCTGCTGAACGTCGACAGCGGCGAACGC
CTGAGCTGCGATTGCGCCGAACAGCGCGCGCCGGCCAGACCCGCCGCCACGCCCGCATGA