ViewGene
Locus Name:
GeneID:
Location:

GeneID:2603
TrivialName: PA14_00820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00820
PAO1 Ortholog Locus:PA0070
Sequence Length:915
Protein Length:304
Start: 80963
Stop: 80049
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03460.1|AE004446_8 (AE004446) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 299/304 (98%), Positives = 302/304 (99%)
Sequence:
ATGAGCCAACCCAGCGAAAACCGTTTGATCACCTCGGCGCGCTACGCGCTCTGCCTGTTGACCGCCAGCGGC
GTGCTGCTCAGCGGCTGCGCCAGCAGCGGCGTCGGCTCGGTCGCCCAGACCACCCGCGCGGAATACTACCCG
TCCTGCTACGAGCCGGTGTCGCACCTGCGCAGCACCGATAACGCGGTGCGCAACTCGGCCATCACCGGCGCC
ATCACCGGCGGCCTCCTGGGCGGCCTGGCCGGCGGCCTGGCCAGCGACGAGAACCGCGGCCGCAATGCCGCC
CTCGCTGCCGCAGGCGGCGCCCTGGCCGGCGGCGCGGCGGGCTACTACATGGAGAAGCAGAAGCAGATCAGC
GACGACCGCGCGCGCATCGGCTCCTACGCTACCGACGTCGACCGCAGCACCGTCGAGATCAACCGTAGCGTG
GCCTACGCCAAGTCGGCGCAAAGCTGCTACCAGAGCCAGTTCAAGGCCCTGCTCGACGGCCGCAAGAACAAG
TCGATCAACGAAGCCGAAGGGCGCAAGCGCCTGGCCGAGATCGTCAGCGGCCTGCAGGAGACCAACGCCCTG
CTGGTCGCCGCCAACGGCCGTGCCGGCGAGAACATCAACAACTACACCCAGGCCTACGAGAAAGACCTGCAG
CAGGTCGGCGTACCGCGCACCGAAGTGACCAAGGTCGCCGAGGCCGAGAACCGCGCCAGCACTACGAAAGGC
GGCAGCAAGCCCAAGACCGGCAGCAATCCCAAGGTGCCGAAGGAGGCGGTCGCCACCGAGCAGACCATCCGC
AAGGCCCAGGACGCGCAAAGCGAAGGCAACAAGGTGGCCTCCCGGGGCCAGGGCATGATCCAGGAAGTCTGC
AACAGCCCGGACATGGGCGACTGGGCACCGCCGAGCTGCGCCAAGGCCTGA
Translation:
MSQPSENRLITSARYALCLLTASGVLLSGCASSGVGSVAQTTRAEYYPSCYEPVSHLRSTDNAVRNSAITGA
ITGGLLGGLAGGLASDENRGRNAALAAAGGALAGGAAGYYMEKQKQISDDRARIGSYATDVDRSTVEINRSV
AYAKSAQSCYQSQFKALLDGRKNKSINEAEGRKRLAEIVSGLQETNALLVAANGRAGENINNYTQAYEKDLQ
QVGVPRTEVTKVAEAENRASTTKGGSKPKTGSNPKVPKEAVATEQTIRKAQDAQSEGNKVASRGQGMIQEVC
NSPDMGDWAPPSCAKA*
AnnotationID:2611GeneID:2603
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 17:05:40
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0070
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5209




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22354




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33415




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2603_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2603
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4312
                           PA0070_tr
                           translation of PA0070
                           304
                           98.35
                           99.34
                           0
                           1511.0
     

     
     
126705
                           gb|AAG03460.1|AE004446_8
                           (AE004446) hypothetical protein PA0070 [Pseudomonas aeruginosa PAO1]
                           304
                           98.35
                           99.34
                           0
                           1511.0
     

     






      

          
GC ORFID: 45605How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0070Glimmer Score: 

          
Start: 5882300Stop: 5881386

          
Length: 915


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0070 translation of PA0070Homolog Bit Score 586.0

          
Other Homologs:  t_PA0070 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAACCCAGCGAAAACCGTTTGATCACCTCGGCGCGCTACGCGCTCTGCCTGTTGACCGCCAGCGGC 
GTGCTGCTCAGCGGCTGCGCCAGCAGCGGCGTCGGCTCGGTCGCCCAGACCACCCGCGCGGAATACTACCCG 
TCCTGCTACGAGCCGGTGTCGCACCTGCGCAGCACCGATAACGCGGTGCGCAACTCGGCCATCACCGGCGCC 
ATCACCGGCGGCCTCCTGGGCGGCCTGGCCGGCGGCCTGGCCAGCGACGAGAACCGCGGCCGCAATGCCGCC 
CTCGCTGCCGCAGGCGGCGCCCTGGCCGGCGGCGCGGCGGGCTACTACATGGAGAAGCAGAAGCAGATCAGC 
GACGACCGCGCGCGCATCGGCTCCTACGCTACCGACGTCGACCGCAGCACCGTCGAGATCAACCGTAGCGTG 
GCCTACGCCAAGTCGGCGCAAAGCTGCTACCAGAGCCAGTTCAAGGCCCTGCTCGACGGCCGCAAGAACAAG 
TCGATCAACGAAGCCGAAGGGCGCAAGCGCCTGGCCGAGATCGTCAGCGGCCTGCAGGAGACCAACGCCCTG 
CTGGTCGCCGCCAACGGCCGTGCCGGCGAGAACATCAACAACTACACCCAGGCCTACGAGAAAGACCTGCAG 
CAGGTCGGCGTACCGCGCACCGAAGTGACCAAGGTCGCCGAGGCCGAGAACCGCGCCAGCACTACGAAAGGC 
GGCAGCAAGCCCAAGACCGGCAGCAATCCCAAGGTGCCGAAGGAGGCGGTCGCCACCGAGCAGACCATCCGC 
AAGGCCCAGGACGCGCAAAGCGAAGGCAACAAGGTGGCCTCCCGGGGCCAGGGCATGATCCAGGAAGTCTGC 
AACAGCCCGGACATGGGCGACTGGGCACCGCCGAGCTGCGCCAAGGCCTGA