ViewGene
Locus Name:
GeneID:
Location:

GeneID:2601
TrivialName: PA14_58450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58450
PAO1 Ortholog Locus:PA4504
Sequence Length:912
Protein Length:303
Start: 5206678
Stop: 5207589
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07892.1|AE004864_4 (AE004864) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 298/303 (98%), Positives = 301/303 (99%)
Sequence:
ATGAACGCCATGCACAACGCTCCCGCCAGCGACCCGAGCCTGGTCTACCCGTCCCCGCTGAAGGAATTCTGG
CAGTCCTTCGCGCACAACAAGGGCGCCCTCGGCGGCCTGCTGTTCATGCTGCTGATCGTGTTCTGCGCGCTG
TTCGCCCCCTGGGTCGCCCCCTACGATCCGAGCGAGCAGTTCCGCGACTTCCTGCTGACCCCGCCATCCTGG
CTGGAAGGCGGCCAGGCGCGCTTCCTGCTCGGCACCGACGAGCTGGGCCGCGACCTGCTCTCGCGGCTGATC
CACGGCGCCCGCCTGTCGCTGCTGATCGGCCTGTCCTCGGTGGTGATCTCGCTGATCCCCGGCATCCTCCTC
GGCCTGCTCGCCGGCTTCTCGCCGAACCGTGCCGGGCCGCTGATCATGCGCCTGATGGACATCATGCTGGCG
CTGCCGTCGCTGCTGCTGGCGGTGGCCATCGTGGCGATCCTCGGCCCGGGCCTGATCAACACCGTGATCGCT
ATCGCCATCGTCTCGCTGCCGGCCTACGTACGCCTGACCCGCGCCGCGGTGATGACCGAGCTAAACCGCGAC
TACGTCACCGCCTCGCGCCTGGCCGGCGCCGGCACCCTGCGACTGATGTTCGTCTGCGTGCTGCCGAACTGC
ATGGCGCCGCTGATCGTCCAGGCCACCCTGAGCTTCTCTTCGGCGATCCTCGACGCCGCCGCCCTCGGCTTC
CTCGGCCTCGGCGTGCAACCGCCGACCCCCGAGTGGGGCACCATGCTCGCCTCCGCCCGCGACTACATCGAG
CGCGCCTGGTGGGTGGTCAGCCTGCCCGGCCTGACCATCTTGCTCAGCGTACTGGCGATCAACCTGATGGGC
GACGGCCTGCGCGACGCCCTCGATCCGAAACTGAAGAACGCGGCATGA
Translation:
MNAMHNAPASDPSLVYPSPLKEFWQSFAHNKGALGGLLFMLLIVFCALFAPWVAPYDPSEQFRDFLLTPPSW
LEGGQARFLLGTDELGRDLLSRLIHGARLSLLIGLSSVVISLIPGILLGLLAGFSPNRAGPLIMRLMDIMLA
LPSLLLAVAIVAILGPGLINTVIAIAIVSLPAYVRLTRAAVMTELNRDYVTASRLAGAGTLRLMFVCVLPNC
MAPLIVQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSVLAINLMG
DGLRDALDPKLKNAA*
AnnotationID:2609GeneID:2601
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 06:06:59
Gene Name:dppC
Confidence Code:3
GeneProduct:dipeptide ABC transporter, permease protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1173,COG4171
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66505.1|AE016279_8 (AE016777) dipeptide ABC transporter, permease protein [Pseudomonas
           putida KT2440]
          Length = 308

 Score =  512 bits (1318), Expect = e-144
 Identities = 265/299 (88%), Positives = 278/299 (92%), Gaps = 2/299 (0%)

>gb|AAN82793.1|AE016768_211 (AE016768) Dipeptide transport system permease protein dppC
           [Escherichia coli CFT073]
          Length = 300

 Score =  383 bits (984), Expect = e-106
 Identities = 182/283 (64%), Positives = 232/283 (81%)






 
Structural Features:
COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, 
permease components 
[Amino acid transport and metabolism / 
Inorganic ion transport and metabolism]
CD-Length = 289 residues,  96.5% aligned
Score =  272 bits (696), Expect = 1e-73
Identities = 153/284 (53%), Positives = 198/284 (69%), Gaps = 6/284 (2%)

COG4171, SapC, ABC-type antimicrobial peptide transport system, 
permease component [Defense mechanisms]
CD-Length = 296 residues,  94.6% aligned
Score =  233 bits (595), Expect = 4e-62
Identities = 120/280 (42%), Positives = 173/280 (61%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5205




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22350




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31548




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2601_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2601
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4310
                           PA4504_tr
                           translation of PA4504
                           303
                           98.34
                           99.33
                           0
                           1510.0
     

     
     
126288
                           gb|AAG07892.1|AE004864_4
                           (AE004864) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           303
                           98.34
                           99.33
                           0
                           1510.0
     

     
     
126289
                           gb|AAO58011.1|
                           (AE016872) dipeptide ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           303
                           87.12
                           92.40
                           0
                           1320.0
     

     
     
126290
                           gb|AAN66505.1|AE016279_8
                           (AE016777) dipeptide ABC transporter, permease protein [Pseudomonas putida KT2440]
                           308
                           85.38
                           89.93
                           5
                           1312.0
     

     
     
126291
                           gb|AAQ58774.1|
                           (AE016913) dipeptide transport system permease protein [Chromobacterium violaceum ATCC 12472]
                           306
                           75.81
                           84.96
                           3
                           1184.0
     

     






      

          
GC ORFID: 45603How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4504Glimmer Score: 

          
Start: 4470356Stop: 4471267

          
Length: 912


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4504 translation of PA4504Homolog Bit Score 586.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5618 (ORF: BLASTX 358.0), psyr_15may02_Scaffold6_revised_gene6688 (ORF: BLASTX 248.0), psyr_15may02_Scaffold1_revised_gene231 (ORF: BLASTX 231.0), psyr_15may02_Scaffold7_revised_gene7190 (ORF: BLASTX 185.0), psyr_15may02_Scaffold1_revised_gene1326 (ORF: BLASTX 144.0), t_PA4504 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCCATGCACAACGCTCCCGCCAGCGACCCGAGCCTGGTCTACCCGTCCCCGCTGAAGGAATTCTGG 
CAGTCCTTCGCGCACAACAAGGGCGCCCTCGGCGGCCTGCTGTTCATGCTGCTGATCGTGTTCTGCGCGCTG 
TTCGCCCCCTGGGTCGCCCCCTACGATCCGAGCGAGCAGTTCCGCGACTTCCTGCTGACCCCGCCATCCTGG 
CTGGAAGGCGGCCAGGCGCGCTTCCTGCTCGGCACCGACGAGCTGGGCCGCGACCTGCTCTCGCGGCTGATC 
CACGGCGCCCGCCTGTCGCTGCTGATCGGCCTGTCCTCGGTGGTGATCTCGCTGATCCCCGGCATCCTCCTC 
GGCCTGCTCGCCGGCTTCTCGCCGAACCGTGCCGGGCCGCTGATCATGCGCCTGATGGACATCATGCTGGCG 
CTGCCGTCGCTGCTGCTGGCGGTGGCCATCGTGGCGATCCTCGGCCCGGGCCTGATCAACACCGTGATCGCT 
ATCGCCATCGTCTCGCTGCCGGCCTACGTACGCCTGACCCGCGCCGCGGTGATGACCGAGCTAAACCGCGAC 
TACGTCACCGCCTCGCGCCTGGCCGGCGCCGGCACCCTGCGACTGATGTTCGTCTGCGTGCTGCCGAACTGC 
ATGGCGCCGCTGATCGTCCAGGCCACCCTGAGCTTCTCTTCGGCGATCCTCGACGCCGCCGCCCTCGGCTTC 
CTCGGCCTCGGCGTGCAACCGCCGACCCCCGAGTGGGGCACCATGCTCGCCTCCGCCCGCGACTACATCGAG 
CGCGCCTGGTGGGTGGTCAGCCTGCCCGGCCTGACCATCTTGCTCAGCGTACTGGCGATCAACCTGATGGGC 
GACGGCCTGCGCGACGCCCTCGATCCGAAACTGAAGAACGCGGCATGA