ViewGene
Locus Name:
GeneID:
Location:

GeneID:260
TrivialName: PA14_26420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26420
PAO1 Ortholog Locus:PA2911
Sequence Length:2157
Protein Length:718
Start: 2303510
Stop: 2301354
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06299.1|AE004717_5 (AE004717) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
Identities = 713/718 (99%), Positives = 717/718 (99%)
Sequence:
ATGCCCCGCTTCAGCCGTTTGCGCACCGAGCCTTTCGCCCTCGGCCTATCCACCAGCCTGCTGCTGGTACCG
CCCGCCCTCGCCGAAACCGAGGAAGCCGCCCTCGCCCTGCCCAGCCAGTTGGTCAGCGTTCGCCAGGACCCC
GCCGAACTCGACCACATCGATCTCGCCACGCCGGTCAGTGCCGGTTCGCGCCTGGGCCTCAGCGCCCTGGAC
ACCCCGGCGAGCACCAGCAGCATCAGCGGCGAGGAAGTTCGCCGGCGCAACAACCCCAGCGTCCAGGCCGCC
GTCACCCGCAGCCCCGGCATCAGCTTCATCGGCACCCCAGGAGATGGCGGTACCGGCCTCTCGGCGCGCGGC
TTCAGCGGCCACGCATCGGTGATGCAACTGTTCGACGGCACGCGCCTGTACACCGGCATGGGCACGGTGAAC
TTCCCCAGCGATCCGTGGATGGTCGAGCGCATCGACGTGATCCGCGGCCCGGCCTCGGTGCTGTACGGCGAA
GGCGCCACCGGCGCGGTGATCAACGTGGTGCCGAAGAAGCCTTTCGCCGGCGAGATCCGCAACCACCTGCGC
CTCGGCTACGGCTCCTACGACAACCGCCAGTTGGCCCTGGACAGCGGCGGCTCGCTGACCGACAGCCTCAGC
TACCGGCTCAACCTGAACCAGCAGCAGAGCCACGGCTGGATCGACCGTGGCGACTCGCGCAACCTGGGCATC
AGCGCGGCGCTGCGCTGGCAGGCCAGCGACGATCTGGCCTTCACCCTCGCCCACGACTATGGCGACCAGGAG
CCGATGAACGACTTCGGCACCCCGCTGGTCGGCGGCAAGTACCACAAGCGCCTGCGCGAGAAGAACTACAAC
GTGCGCAACGACGTGCAGCGCTACAACGACCAGTGGACCCGCCTGACCAGCGACTGGAGCCTTTCCGACAGC
GTCACCGCGAGCAACCAGCTGTACTACATCAAGGCCCGCCGCCACTGGCGCAACGCCGAAACCTACGAATGG
GACGTCCCGCGCGAAGAGCTGTTGCGCAAGGACTACCTGCGCATCAGCCACGAGCAGGAGCAGATCGGCGAC
CGCCAGACCTTCGCCTTCCAGCACGCCCTGTTCGGCCTCGACAGCCGCACCCTGGTCGGCGCCGAGTACAAC
CGCATCCGCTTCCGCCTGACCAACAACTCGCCCTATACCGATGTCGGCGGCGACTACATCGACCCCTGGCAC
CCCGCGCCCGGCTACTTCGAAAGCCGCTCGCCCTACCGGCCGCACTCGCGCAGCCAGACCCGCACCTTCGCC
CTGTTCGCCGAGAACCGCCTGCAGCTCAACGAGCGCCTGTCGCTGGTGACCGGGGTGCGCCGCGACCAGAAC
CATATCGACCGCGACGACCTGCGCGCCGGCACCCGCAGCGACCGCAGCCTGCAGGGCGGCAACTGGCGCGCC
GGGCTGGTCTTCGCGCTGACCCCGGAACTGTCGCTGTACGGCCAGTACTCCACCAGCGAGGACGGCGTGAGC
AACCTGATCACCCTCAACGCGGCCCAGCAGCAAATGGACCTGACCCACTCGAAGCAGACCGAGGTCGGCCTC
AAGCAACTGTTCCCGGACGGTCGCGGCGAATGGACCCTGGCCGCCTACCATATCGTCAAGAAGAAGCTGCTC
AGCGCCAACCCGCTGCCGCCGCACGACGCGCAGCAGGTCGGCCAGCAGAGTTCGGACGGCCTGGAGGCCAGC
CTGGAACTGAACCTGGCCCAGGACTGGCGGCTGTCGGCGAACGCCGCGCTGGTGCGTGCCGAATACGACGAC
TTCGACGAAACGATCGACAAGCAGACCTACTCGCGCAACGGCAACCGCCCCAGGAACGTGCCACGGCGCACC
GCCAACCTCTGGCTGGACAAGTCCTTCGCCGATACCCTGCGCGTCGGCGCCGGGCTGCGCTACGTCGACCGG
CGCTACGCCGACGCCGCCAACCAGGCCAGCCTGCCCGGCTACACGGTGGTCGACGCCAACCTGGGCTGGCGG
GTACGGCCGGACCTGACCCTCGGCCTTGAGCTGTACAACCTGTTCGACCGCCAGTACGCCCTGGCTGACAAC
AACAACGGCCAGCAATGGATCATGGGCCAGCCGCGCTCGTTCAACGTCACCGCCGACTTCAGTTTCTGA
Translation:
MPRFSRLRTEPFALGLSTSLLLVPPALAETEEAALALPSQLVSVRQDPAELDHIDLATPVSAGSRLGLSALD
TPASTSSISGEEVRRRNNPSVQAAVTRSPGISFIGTPGDGGTGLSARGFSGHASVMQLFDGTRLYTGMGTVN
FPSDPWMVERIDVIRGPASVLYGEGATGAVINVVPKKPFAGEIRNHLRLGYGSYDNRQLALDSGGSLTDSLS
YRLNLNQQQSHGWIDRGDSRNLGISAALRWQASDDLAFTLAHDYGDQEPMNDFGTPLVGGKYHKRLREKNYN
VRNDVQRYNDQWTRLTSDWSLSDSVTASNQLYYIKARRHWRNAETYEWDVPREELLRKDYLRISHEQEQIGD
RQTFAFQHALFGLDSRTLVGAEYNRIRFRLTNNSPYTDVGGDYIDPWHPAPGYFESRSPYRPHSRSQTRTFA
LFAENRLQLNERLSLVTGVRRDQNHIDRDDLRAGTRSDRSLQGGNWRAGLVFALTPELSLYGQYSTSEDGVS
NLITLNAAQQQMDLTHSKQTEVGLKQLFPDGRGEWTLAAYHIVKKKLLSANPLPPHDAQQVGQQSSDGLEAS
LELNLAQDWRLSANAALVRAEYDDFDETIDKQTYSRNGNRPRNVPRRTANLWLDKSFADTLRVGAGLRYVDR
RYADAANQASLPGYTVVDANLGWRVRPDLTLGLELYNLFDRQYALADNNNGQQWIMGQPRSFNVTADFSF*
AnnotationID:270GeneID:260
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 07:07:25
Gene Name:
Confidence Code:3
GeneProduct:putative TonB-dependent receptor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative outer membrane ferric siderophore receptor
Functional Category Confidence Code:5
COGs:cd01347,pfam00593,COG1629,COG4774
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68032.1|AE016435_9 (AE016783) outer membrane ferric siderophore receptor [Pseudomonas
           putida KT2440]
          Length = 728

 Score =  963 bits (2490), Expect = 0.0
 Identities = 473/704 (67%), Positives = 562/704 (79%), Gaps = 6/704 (0%)

>gb|AAO58979.1| (AE016876) TonB-dependent receptor [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 739

 Score =  867 bits (2239), Expect = 0.0
 Identities = 424/691 (61%), Positives = 529/691 (76%), Gaps = 6/691 (0%)








 
Structural Features:
cd01347, TonB dependent/Ligand-Gated channel
CD-Length = 672 residues, 100.0% aligned
Score =  269 bits (689), Expect = 6e-73

pfam00593, TonB dependent receptor.
CD-Length = 712 residues, 100.0% aligned
Score =  237 bits (604), Expect = 4e-63
Identities = 176/724 (24%), Positives = 266/724 (36%), Gaps = 88/724 (12%)

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues, 100.0% aligned
Score =  197 bits (501), Expect = 3e-51
Identities = 185/765 (24%), Positives = 281/765 (36%), Gaps = 66/765 (8%)

COG4774, Fiu, Outer membrane receptor for monomeric catechols 
[Inorganic ion transport and metabolism]
CD-Length = 750 residues,  98.0% aligned
Score =  188 bits (479), Expect = 2e-48
Identities = 180/768 (23%), Positives = 297/768 (38%), Gaps = 93/768 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:523




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17665




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36147




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:260_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:260
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
437
                           PA2911_tr
                           translation of PA2911
                           718
                           99.30
                           99.86
                           0
                           3739.0
     

     
     
23653
                           gb|AAG06299.1|AE004717_5
                           (AE004717) probable TonB-dependent receptor [Pseudomonas aeruginosa PAO1]
                           718
                           99.30
                           99.86
                           0
                           3739.0
     

     
     
23654
                           gb|AAN68032.1|AE016435_9
                           (AE016783) outer membrane ferric siderophore receptor [Pseudomonas putida KT2440]
                           739
                           64.68
                           76.86
                           32
                           2502.0
     

     
     
23655
                           gb|AAO58979.1|
                           (AE016876) TonB-dependent receptor [Pseudomonas syringae pv. tomato str. DC3000]
                           750
                           57.46
                           72.00
                           43
                           2249.0
     

     
     
23657
                           gb|AAM39712.1|
                           (AE012135) TonB-dependent receptor [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           723
                           42.04
                           57.67
                           17
                           1367.0
     

     






      

          
GC ORFID: 43262How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2911Glimmer Score: 

          
Start: 2650415Stop: 2652571

          
Length: 2157


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2911 translation of PA2911Homolog Bit Score 1444.0

          
Other Homologs:  t_PA2911 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCGCTTCAGCCGTTTGCGCACCGAGCCTTTCGCCCTCGGCCTATCCACCAGCCTGCTGCTGGTACCG 
CCCGCCCTCGCCGAAACCGAGGAAGCCGCCCTCGCCCTGCCCAGCCAGTTGGTCAGCGTTCGCCAGGACCCC 
GCCGAACTCGACCACATCGATCTCGCCACGCCGGTCAGTGCCGGTTCGCGCCTGGGCCTCAGCGCCCTGGAC 
ACCCCGGCGAGCACCAGCAGCATCAGCGGCGAGGAAGTTCGCCGGCGCAACAACCCCAGCGTCCAGGCCGCC 
GTCACCCGCAGCCCCGGCATCAGCTTCATCGGCACCCCAGGAGATGGCGGTACCGGCCTCTCGGCGCGCGGC 
TTCAGCGGCCACGCATCGGTGATGCAACTGTTCGACGGCACGCGCCTGTACACCGGCATGGGCACGGTGAAC 
TTCCCCAGCGATCCGTGGATGGTCGAGCGCATCGACGTGATCCGCGGCCCGGCCTCGGTGCTGTACGGCGAA 
GGCGCCACCGGCGCGGTGATCAACGTGGTGCCGAAGAAGCCTTTCGCCGGCGAGATCCGCAACCACCTGCGC 
CTCGGCTACGGCTCCTACGACAACCGCCAGTTGGCCCTGGACAGCGGCGGCTCGCTGACCGACAGCCTCAGC 
TACCGGCTCAACCTGAACCAGCAGCAGAGCCACGGCTGGATCGACCGTGGCGACTCGCGCAACCTGGGCATC 
AGCGCGGCGCTGCGCTGGCAGGCCAGCGACGATCTGGCCTTCACCCTCGCCCACGACTATGGCGACCAGGAG 
CCGATGAACGACTTCGGCACCCCGCTGGTCGGCGGCAAGTACCACAAGCGCCTGCGCGAGAAGAACTACAAC 
GTGCGCAACGACGTGCAGCGCTACAACGACCAGTGGACCCGCCTGACCAGCGACTGGAGCCTTTCCGACAGC 
GTCACCGCGAGCAACCAGCTGTACTACATCAAGGCCCGCCGCCACTGGCGCAACGCCGAAACCTACGAATGG 
GACGTCCCGCGCGAAGAGCTGTTGCGCAAGGACTACCTGCGCATCAGCCACGAGCAGGAGCAGATCGGCGAC 
CGCCAGACCTTCGCCTTCCAGCACGCCCTGTTCGGCCTCGACAGCCGCACCCTGGTCGGCGCCGAGTACAAC 
CGCATCCGCTTCCGCCTGACCAACAACTCGCCCTATACCGATGTCGGCGGCGACTACATCGACCCCTGGCAC 
CCCGCGCCCGGCTACTTCGAAAGCCGCTCGCCCTACCGGCCGCACTCGCGCAGCCAGACCCGCACCTTCGCC 
CTGTTCGCCGAGAACCGCCTGCAGCTCAACGAGCGCCTGTCGCTGGTGACCGGGGTGCGCCGCGACCAGAAC 
CATATCGACCGCGACGACCTGCGCGCCGGCACCCGCAGCGACCGCAGCCTGCAGGGCGGCAACTGGCGCGCC 
GGGCTGGTCTTCGCGCTGACCCCGGAACTGTCGCTGTACGGCCAGTACTCCACCAGCGAGGACGGCGTGAGC 
AACCTGATCACCCTCAACGCGGCCCAGCAGCAAATGGACCTGACCCACTCGAAGCAGACCGAGGTCGGCCTC 
AAGCAACTGTTCCCGGACGGTCGCGGCGAATGGACCCTGGCCGCCTACCATATCGTCAAGAAGAAGCTGCTC 
AGCGCCAACCCGCTGCCGCCGCACGACGCGCAGCAGGTCGGCCAGCAGAGTTCGGACGGCCTGGAGGCCAGC 
CTGGAACTGAACCTGGCCCAGGACTGGCGGCTGTCGGCGAACGCCGCGCTGGTGCGTGCCGAATACGACGAC 
TTCGACGAAACGATCGACAAGCAGACCTACTCGCGCAACGGCAACCGCCCCAGGAACGTGCCACGGCGCACC 
GCCAACCTCTGGCTGGACAAGTCCTTCGCCGATACCCTGCGCGTCGGCGCCGGGCTGCGCTACGTCGACCGG 
CGCTACGCCGACGCCGCCAACCAGGCCAGCCTGCCCGGCTACACGGTGGTCGACGCCAACCTGGGCTGGCGG 
GTACGGCCGGACCTGACCCTCGGCCTTGAGCTGTACAACCTGTTCGACCGCCAGTACGCCCTGGCTGACAAC 
AACAACGGCCAGCAATGGATCATGGGCCAGCCGCGCTCGTTCAACGTCACCGCCGACTTCAGTTTCTGA