ViewGene
Locus Name:
GeneID:
Location:

GeneID:26
TrivialName: PA14_58090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58090
PAO1 Ortholog Locus:PA4476
Sequence Length:3831
Protein Length:1276
Start: 5172218
Stop: 5168388
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07864.1|AE004861_5 (AE004861) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 1271/1276 (99%), Positives = 1273/1276 (99%)
Sequence:
ATGGCGGATGTGGGAAGCCTCGGAACGCGACTGCTACGGATCGTCCTGGGTCTGTGCGCCCTGGTACTGGTG
CTGCTGGCGCTGTACGTCAGCCTTGGCCGGCAACTGGTGCCGCTGGTGGCCGAATACCGCCAGCAGCTGGAG
GACGAAGCTGGCAAGCAACTCGGCATACCGGTGCGGATTGCCGAGCTGACGGGCTCCTGGCGCGGCTTCGAG
CCTCTGGTGGTGGCGCGCGACATCCAGGTCGGCGACGGCGAACAGAGTCTGCGCCTGGCGCGGGTGCGGCTG
GCGCCGGACCTGCTCGGCAGCCTGCTGGCGCGCCAGGTGCGGATCGGCAGCCTGGAGCTGGAGGGACTCAAG
CTGACCCTGCGCGAAGGCGAGGATGGCCAGTGGAGCCTGGATGGCCTGCCGCACAGCGACAAGCCCAGCGAT
CCCCGGAAACTCCTGCAATTCCTGCTGCAGACCCAACGCATCTCGCTGCTGGACAGTCAACTGGAGGTGGCG
CCGCGGGGAAGCGCAGCGTTGTCGCTCAGCGCGGTCGGCGCGACCCTGCGCAGTTCATCGGTTGGTGGGCAG
AGTCTCGATGCCCGCCTGCAACTGCCGGATGGCCAACCTCTGGCGCTGCACGCCGAAGGGCGGATCGACAGC
GAGGACTGGCCGCGCAGCAGCGCCAGGTTCTATCTCAGCCTGCCGCAGAGCGACTGGGCGCAATGGTTGCCG
GCCGGTCTGACCCAGGAATGGAAGATCGCCCGGGCCAAGGCCGGCGGCGACTTCTGGTTCGACTGGCGCGAC
GGCAAGGCGCAACGGCTGGTGGCACGGCTGCTGGCGCCGCAGTTGAAGGCCTCGTATGCCGCGCGCAAGCCG
GTGGAAATCAACGACCTGGGCATGAACCTGTTCTTCGATCGCGAAGCGCAGGGCTGGAAGGTTCGGGTCGGC
GACCTGGCGGCGAATTTCGGCGAGCAGCGCTGGGGCGAGGTGGAGTTGCTGTTGCGTCGCGACCAGCAGAAC
AACGAGCCACACTGGAAGCTGCAGGCCGACCGCGTCGACCTGACGCCCCTGGTGCCGGCGATAGAAGCGCTG
GCGCCGCTGCCGGACGCGGCGGCGGAGTGGGTGGCGGGCCTGAAGCCGAAGGGCATCCTGCACAACCTGAAC
GCCGATTTCTGGCCGCAGCGGGAGGTGCCCGAGCGGGTCAGCTACGCGACCAACCTGGAAAAGGTCGGTATC
TCGGCGTTCCATGAGGTCCCGGCGGTGGAAAACGTCAGCGGCACCTTGACCGGCACCCTGGCCGGAGGCCAG
CTCGACGCATCGGCGCAGGATTTCATGCTGCACCTGGCCAAGGTATTTCCCGAGCCGTGGCGCTACCGCGAG
GCTCGCACGCGGATGTTCTGGAGCCTGGACGACCGCGCCTTCACCCTCGGCAGCCACCTGATGCGGGTCGAG
GGCGAGGAGGGCAGCCTGGCCGGCGACATGCTGATCCGCCTGATGCGCGATCCCGGCGCTGAAGACTACATG
GACCTGCAGGTCGGCCTCAGCGACGGCGACGCGCGCTTCACCGCCAAGTACCTGCCGACCCAGTTGCCGGGA
ATGAACAAAAGCCTGGCGAACTGGTTGAAGACGGCGATCCGCAGTGGCCATGTCGAGCAGGGCTACTTCCAG
TGGCAGGGCTCGCTGAACCGCGGCGCGGCGGCCGAAGCCCACGTCATGAACCTCTACTTTAAGGTCCGCGAC
GGCGAGCTGGCCTACCAGCCCGGCTGGCCCGCCTTGAGCAAAACGGTCGGCGAGGTGTTCGTCGAGGATTCC
GGAGTCCGCGTGCTGGCCTCCAGCGGGAATCTGCTGAATTCCCGGGTCAGCGACGTCAAGGTCGACATACCT
CTCGGCCGGCCGGGACAGACGCCGCACCTGTATGTGGATGGCGCCGTCGACAGTAACCTGAAGGACGGCATC
AAGCTGCTCCAGGAAGCGCCGATCCCGACCCGCAAGATCTTCGCCGGCTGGGAGGGCGACGGGCCCTTGCAG
GGCCACCTGAAGCTGGATATTCCACTGGACCACGACGAGGCCGGCAAGACCGGGGTGGTCGTGGATTTCTCC
ACCGTGGGCGCGACCCTGAAGATGCCCAGTCCGAAGCTGGATATGAGCGAAGTGAAGGGCGACTTCCGTTTC
GACCTGGCCAAGGGCCTGAGCGCCCCGGCGGTGCAGGCCCGGGTGCTGGGCAGCGAGGTACGCGGGCGGATC
GTCGCCGAGGGGCGCGGCGATGCGCGCACGCGCTTGCTGCTCAACGGCCAGGTGGCGGTCAAGTCACTGAGC
GACTGGCTCGGCGCTGGCCAGCGTCCGTTACCGGTCTCGGGACGCCTGCCGTTCCAGCTCAACCTGCTGCTG
GATGGCAAGGACAGCCAGTTGCAGATCGATTCGGATCTCAAGGGCGCCGTCGTCGACCTGCCGGCGCCGTTC
GGCAAGACGGCCGCCCAGGCGCGGCCGACCCAGTGGCGGATGACCCTGGATGGCGCCGAACGGCGTTACTGG
GCGCGTTACGACGGCCTCGCCAGCCTGGCCTATGCGGCCCCGGCGGACAAGCCGCTGAACGGACGCGGCGCC
CTGCGCCTGGGTGGTGACCCGGCGCTGCTGCCCTCGGCACAGGGGCTGCGGGTGCGCGGGCGTCTGGCGGAA
CTGGACTGGGACTCCTGGCAGGCCACCCTGAAGCGCTACGGCAATGGCGACCAGGCTGCCAGTAGCGCTGCG
GGCCTGCTGCGCGGCGCCGACCTGCGCATCGACAGCTTCAAGGGCTTCGGCCAGGAGCTGAAGAACCTGACC
GTCGACCTGGCCCGCCAGGAGCGGGCCTGGCAACTGGTGCTGGTCAGCGACCTCGCATCGGGGCGTCTGGTC
CTGCCGGATGCCAGGGGCGCGCCGATCGTGGTCGATCTGGACCGCCTGAACCTGCCGAAGTCGACCCTTCCC
GACGAGAACAAGGTGGAGGACTCGGACCCGCTGGCCGCCGTCGATCCGCGCAGCCTGCCGGCGGTAGACGTG
AAGATCGGCCAGGTCGCCCTTGGCGGCCAGCCGCTGGGCGCCTGGAGCCTGAAGGTACGGCCGGGCAGCAAC
GGCGTGGCGTTCAACGACCTGGACCTCGACCTGCGTGGCCTGCACGTCAATGGCAGCCTGCGCTGGGACGGC
AGTCCGGGCAATACCCGCAGCACCTACCAGGGACGGATCGAGGGCAAGAACCTGGCGGATGTGCTCAAGGCC
TGGAATTTCGCGCCGAGCGCCACCAGCGAACGTTTCCGCATGGATATCAACGGCCAGTGGCCGGGATCGCCG
GCCTACATGGCCCTGAAGCGCTTCAGCGGCAGCATGGATGCATCGCTGCGCAAGGGGCAGTTCGTCGAGGTC
GAAGGCAGCGCCCAGGCGCTGCGAGTGTTCGGCCTGCTCAATTTCAACGCGATCAACCGCCGGCTGCGCCTG
GACTTCTCGGACATCCTCGGCAAGGGACTGAGCTATGACCGGGTGAAGGGGGTTCTCTCCGCCACCGACGGC
GTCTACATCACCCGCGAGCCGCTGAAGCTGGAAGGGCCGTCGAGCAACCTGGAGTTGAACGGTACCCTGGAC
CTGGCTCACGATCGGATCGACGCCAAGCTGCTGGTGACCTTGCCATTGACCAACAACCTGACCCTGGCGGCA
CTGATAGTCGGCGGTCCGGCGGTCGGCGGCGCGGTCTTCGTCGTCGACAAGTTGCTCGGCGACCGGGTCTCG
CGCTTCGCCAGCGTGCAATACAGCGTCAAGGGCCCCTGGCAGGATCCGAAGATCAGCTTCGACAAGCCATTC
GAGAAGCCCCGCTGA
Translation:
MADVGSLGTRLLRIVLGLCALVLVLLALYVSLGRQLVPLVAEYRQQLEDEAGKQLGIPVRIAELTGSWRGFE
PLVVARDIQVGDGEQSLRLARVRLAPDLLGSLLARQVRIGSLELEGLKLTLREGEDGQWSLDGLPHSDKPSD
PRKLLQFLLQTQRISLLDSQLEVAPRGSAALSLSAVGATLRSSSVGGQSLDARLQLPDGQPLALHAEGRIDS
EDWPRSSARFYLSLPQSDWAQWLPAGLTQEWKIARAKAGGDFWFDWRDGKAQRLVARLLAPQLKASYAARKP
VEINDLGMNLFFDREAQGWKVRVGDLAANFGEQRWGEVELLLRRDQQNNEPHWKLQADRVDLTPLVPAIEAL
APLPDAAAEWVAGLKPKGILHNLNADFWPQREVPERVSYATNLEKVGISAFHEVPAVENVSGTLTGTLAGGQ
LDASAQDFMLHLAKVFPEPWRYREARTRMFWSLDDRAFTLGSHLMRVEGEEGSLAGDMLIRLMRDPGAEDYM
DLQVGLSDGDARFTAKYLPTQLPGMNKSLANWLKTAIRSGHVEQGYFQWQGSLNRGAAAEAHVMNLYFKVRD
GELAYQPGWPALSKTVGEVFVEDSGVRVLASSGNLLNSRVSDVKVDIPLGRPGQTPHLYVDGAVDSNLKDGI
KLLQEAPIPTRKIFAGWEGDGPLQGHLKLDIPLDHDEAGKTGVVVDFSTVGATLKMPSPKLDMSEVKGDFRF
DLAKGLSAPAVQARVLGSEVRGRIVAEGRGDARTRLLLNGQVAVKSLSDWLGAGQRPLPVSGRLPFQLNLLL
DGKDSQLQIDSDLKGAVVDLPAPFGKTAAQARPTQWRMTLDGAERRYWARYDGLASLAYAAPADKPLNGRGA
LRLGGDPALLPSAQGLRVRGRLAELDWDSWQATLKRYGNGDQAASSAAGLLRGADLRIDSFKGFGQELKNLT
VDLARQERAWQLVLVSDLASGRLVLPDARGAPIVVDLDRLNLPKSTLPDENKVEDSDPLAAVDPRSLPAVDV
KIGQVALGGQPLGAWSLKVRPGSNGVAFNDLDLDLRGLHVNGSLRWDGSPGNTRSTYQGRIEGKNLADVLKA
WNFAPSATSERFRMDINGQWPGSPAYMALKRFSGSMDASLRKGQFVEVEGSAQALRVFGLLNFNAINRRLRL
DFSDILGKGLSYDRVKGVLSATDGVYITREPLKLEGPSSNLELNGTLDLAHDRIDAKLLVTLPLTNNLTLAA
LIVGGPAVGGAVFVVDKLLGDRVSRFASVQYSVKGPWQDPKISFDKPFEKPR*
AnnotationID:36GeneID:26
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 09:09:26
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4476
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3164
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3164, Predicted membrane protein 
CD-Length = 1271 residues,  99.9% aligned
Score = 1312 bits (3397), Expect = 0.0
Identities = 452/1290 (35%), Positives = 613/1290 (47%), Gaps = 41/1290 (3%)








   
Genomic Context:






   
Comment:


















    ReferenceID:55




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17197




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31514




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:26_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:26
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
53
                           PA4476_tr
                           translation of PA4476
                           1276
                           99.60
                           99.76
                           0
                           6547.0
     

     
     
11010
                           gb|AAG07864.1|AE004861_5
                           (AE004861) hypothetical protein PA4476 [Pseudomonas aeruginosa PAO1]
                           1276
                           99.60
                           99.76
                           0
                           6547.0
     

     
     
11011
                           gb|AAO57916.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           1282
                           53.58
                           69.03
                           17
                           3445.0
     

     
     
11012
                           gb|AAN66563.1|AE016285_1
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           1281
                           51.28
                           67.60
                           13
                           3286.0
     

     






      

          
GC ORFID: 43028How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4476Glimmer Score: 

          
Start: 4435897Stop: 4432067

          
Length: 3831


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4476 translation of PA4476Homolog Bit Score 2526.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5510 (ORF: BLASTX 1334.0), t_PA4476 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGGATGTGGGAAGCCTCGGAACGCGACTGCTACGGATCGTCCTGGGTCTGTGCGCCCTGGTACTGGTG 
CTGCTGGCGCTGTACGTCAGCCTTGGCCGGCAACTGGTGCCGCTGGTGGCCGAATACCGCCAGCAGCTGGAG 
GACGAAGCTGGCAAGCAACTCGGCATACCGGTGCGGATTGCCGAGCTGACGGGCTCCTGGCGCGGCTTCGAG 
CCTCTGGTGGTGGCGCGCGACATCCAGGTCGGCGACGGCGAACAGAGTCTGCGCCTGGCGCGGGTGCGGCTG 
GCGCCGGACCTGCTCGGCAGCCTGCTGGCGCGCCAGGTGCGGATCGGCAGCCTGGAGCTGGAGGGACTCAAG 
CTGACCCTGCGCGAAGGCGAGGATGGCCAGTGGAGCCTGGATGGCCTGCCGCACAGCGACAAGCCCAGCGAT 
CCCCGGAAACTCCTGCAATTCCTGCTGCAGACCCAACGCATCTCGCTGCTGGACAGTCAACTGGAGGTGGCG 
CCGCGGGGAAGCGCAGCGTTGTCGCTCAGCGCGGTCGGCGCGACCCTGCGCAGTTCATCGGTTGGTGGGCAG 
AGTCTCGATGCCCGCCTGCAACTGCCGGATGGCCAACCTCTGGCGCTGCACGCCGAAGGGCGGATCGACAGC 
GAGGACTGGCCGCGCAGCAGCGCCAGGTTCTATCTCAGCCTGCCGCAGAGCGACTGGGCGCAATGGTTGCCG 
GCCGGTCTGACCCAGGAATGGAAGATCGCCCGGGCCAAGGCCGGCGGCGACTTCTGGTTCGACTGGCGCGAC 
GGCAAGGCGCAACGGCTGGTGGCACGGCTGCTGGCGCCGCAGTTGAAGGCCTCGTATGCCGCGCGCAAGCCG 
GTGGAAATCAACGACCTGGGCATGAACCTGTTCTTCGATCGCGAAGCGCAGGGCTGGAAGGTTCGGGTCGGC 
GACCTGGCGGCGAATTTCGGCGAGCAGCGCTGGGGCGAGGTGGAGTTGCTGTTGCGTCGCGACCAGCAGAAC 
AACGAGCCACACTGGAAGCTGCAGGCCGACCGCGTCGACCTGACGCCCCTGGTGCCGGCGATAGAAGCGCTG 
GCGCCGCTGCCGGACGCGGCGGCGGAGTGGGTGGCGGGCCTGAAGCCGAAGGGCATCCTGCACAACCTGAAC 
GCCGATTTCTGGCCGCAGCGGGAGGTGCCCGAGCGGGTCAGCTACGCGACCAACCTGGAAAAGGTCGGTATC 
TCGGCGTTCCATGAGGTCCCGGCGGTGGAAAACGTCAGCGGCACCTTGACCGGCACCCTGGCCGGAGGCCAG 
CTCGACGCATCGGCGCAGGATTTCATGCTGCACCTGGCCAAGGTATTTCCCGAGCCGTGGCGCTACCGCGAG 
GCTCGCACGCGGATGTTCTGGAGCCTGGACGACCGCGCCTTCACCCTCGGCAGCCACCTGATGCGGGTCGAG 
GGCGAGGAGGGCAGCCTGGCCGGCGACATGCTGATCCGCCTGATGCGCGATCCCGGCGCTGAAGACTACATG 
GACCTGCAGGTCGGCCTCAGCGACGGCGACGCGCGCTTCACCGCCAAGTACCTGCCGACCCAGTTGCCGGGA 
ATGAACAAAAGCCTGGCGAACTGGTTGAAGACGGCGATCCGCAGTGGCCATGTCGAGCAGGGCTACTTCCAG 
TGGCAGGGCTCGCTGAACCGCGGCGCGGCGGCCGAAGCCCACGTCATGAACCTCTACTTTAAGGTCCGCGAC 
GGCGAGCTGGCCTACCAGCCCGGCTGGCCCGCCTTGAGCAAAACGGTCGGCGAGGTGTTCGTCGAGGATTCC 
GGAGTCCGCGTGCTGGCCTCCAGCGGGAATCTGCTGAATTCCCGGGTCAGCGACGTCAAGGTCGACATACCT 
CTCGGCCGGCCGGGACAGACGCCGCACCTGTATGTGGATGGCGCCGTCGACAGTAACCTGAAGGACGGCATC 
AAGCTGCTCCAGGAAGCGCCGATCCCGACCCGCAAGATCTTCGCCGGCTGGGAGGGCGACGGGCCCTTGCAG 
GGCCACCTGAAGCTGGATATTCCACTGGACCACGACGAGGCCGGCAAGACCGGGGTGGTCGTGGATTTCTCC 
ACCGTGGGCGCGACCCTGAAGATGCCCAGTCCGAAGCTGGATATGAGCGAAGTGAAGGGCGACTTCCGTTTC 
GACCTGGCCAAGGGCCTGAGCGCCCCGGCGGTGCAGGCCCGGGTGCTGGGCAGCGAGGTACGCGGGCGGATC 
GTCGCCGAGGGGCGCGGCGATGCGCGCACGCGCTTGCTGCTCAACGGCCAGGTGGCGGTCAAGTCACTGAGC 
GACTGGCTCGGCGCTGGCCAGCGTCCGTTACCGGTCTCGGGACGCCTGCCGTTCCAGCTCAACCTGCTGCTG 
GATGGCAAGGACAGCCAGTTGCAGATCGATTCGGATCTCAAGGGCGCCGTCGTCGACCTGCCGGCGCCGTTC 
GGCAAGACGGCCGCCCAGGCGCGGCCGACCCAGTGGCGGATGACCCTGGATGGCGCCGAACGGCGTTACTGG 
GCGCGTTACGACGGCCTCGCCAGCCTGGCCTATGCGGCCCCGGCGGACAAGCCGCTGAACGGACGCGGCGCC 
CTGCGCCTGGGTGGTGACCCGGCGCTGCTGCCCTCGGCACAGGGGCTGCGGGTGCGCGGGCGTCTGGCGGAA 
CTGGACTGGGACTCCTGGCAGGCCACCCTGAAGCGCTACGGCAATGGCGACCAGGCTGCCAGTAGCGCTGCG 
GGCCTGCTGCGCGGCGCCGACCTGCGCATCGACAGCTTCAAGGGCTTCGGCCAGGAGCTGAAGAACCTGACC 
GTCGACCTGGCCCGCCAGGAGCGGGCCTGGCAACTGGTGCTGGTCAGCGACCTCGCATCGGGGCGTCTGGTC 
CTGCCGGATGCCAGGGGCGCGCCGATCGTGGTCGATCTGGACCGCCTGAACCTGCCGAAGTCGACCCTTCCC 
GACGAGAACAAGGTGGAGGACTCGGACCCGCTGGCCGCCGTCGATCCGCGCAGCCTGCCGGCGGTAGACGTG 
AAGATCGGCCAGGTCGCCCTTGGCGGCCAGCCGCTGGGCGCCTGGAGCCTGAAGGTACGGCCGGGCAGCAAC 
GGCGTGGCGTTCAACGACCTGGACCTCGACCTGCGTGGCCTGCACGTCAATGGCAGCCTGCGCTGGGACGGC 
AGTCCGGGCAATACCCGCAGCACCTACCAGGGACGGATCGAGGGCAAGAACCTGGCGGATGTGCTCAAGGCC 
TGGAATTTCGCGCCGAGCGCCACCAGCGAACGTTTCCGCATGGATATCAACGGCCAGTGGCCGGGATCGCCG 
GCCTACATGGCCCTGAAGCGCTTCAGCGGCAGCATGGATGCATCGCTGCGCAAGGGGCAGTTCGTCGAGGTC 
GAAGGCAGCGCCCAGGCGCTGCGAGTGTTCGGCCTGCTCAATTTCAACGCGATCAACCGCCGGCTGCGCCTG 
GACTTCTCGGACATCCTCGGCAAGGGACTGAGCTATGACCGGGTGAAGGGGGTTCTCTCCGCCACCGACGGC 
GTCTACATCACCCGCGAGCCGCTGAAGCTGGAAGGGCCGTCGAGCAACCTGGAGTTGAACGGTACCCTGGAC 
CTGGCTCACGATCGGATCGACGCCAAGCTGCTGGTGACCTTGCCATTGACCAACAACCTGACCCTGGCGGCA 
CTGATAGTCGGCGGTCCGGCGGTCGGCGGCGCGGTCTTCGTCGTCGACAAGTTGCTCGGCGACCGGGTCTCG 
CGCTTCGCCAGCGTGCAATACAGCGTCAAGGGCCCCTGGCAGGATCCGAAGATCAGCTTCGACAAGCCATTC 
GAGAAGCCCCGCTGA