ViewGene
Locus Name:
GeneID:
Location:

GeneID:2599
TrivialName: PA14_21080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21080
PAO1 Ortholog Locus:PA3321
Sequence Length:915
Protein Length:304
Start: 1823700
Stop: 1822786
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06709.1|AE004754_5 (AE004754) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 301/304 (99%), Positives = 302/304 (99%)
Sequence:
ATGCAGCAGATTCATGACCTACGCCGTATCGACCTCAACCTGCTGGTGGTGCTCGACGCGCTCCTCAGCGAG
CGCCACGTGTCCCGCGCGGCGCAGCGCCTGGCCATGTCGCAGCCGGCGGTCAGCCACGCCCTCGGGCGTCTC
CGCGAACTGTTCGGCGATCCGCTGCTGGTGCGGGTGAAAAGCCGCATGCAGTTGACCAGCCTGGCGCTGGAG
CTGGCGCCGAAGCTCCAGGCCAGCCTCGACCAGGTGCGCGGGGTGATCGGCGGGCCGGCCTTCGAGCCGGTG
CGCAGCCGGCGCCACTTCCGCCTGGGCATGTCCGACTACGGCGCCTGGGTGGTGCTGCCGGCGCTGCTGCGC
CAGCAACAGGCGCTGGCGCCCGGGGTGAGCTTCGGGATAGTCCAGGAACCGCGCCTGGAAACCGCCCGGCAG
GTCGCCGAAGGACAACTGGACTGCGCGCTGGGGGTATTCCCCCTGCTTCCGGAGGGCGTGCGCGCCAGGCGC
CTGTTCGAGGAGCGTTTCGTCTGCGTCTGTCGGCGCAGCCTGTTCGACCGCCCCGACGGCCTGTCCCTCGAC
CGCTACCTGGCGGCCCGCCACGTGCGCGTCTCGCTACAGGACAACCCGGCCGAGGAAGTCGACAGCGCCCTG
GAAAAGCGCGGCCTGCGCCGGCAGGTAGCGCTGACCCTGCCGCACTTCACCGTGGCCCCGGCGCTGCTGGCC
GGCACCGACCTGGTACTGACCATCGCCGAGCGCATCCTCGAACGCCTGCGGTTACCCGAGGAACTGGCGGTC
TGCGAGCCGCCGCTGGCGATCCCGCGCTTCGACTACGTGCAGATCTGGCGCGGCGACGCCGAGCGCGAAGCG
GCCGGCGCCTGGCTGCGGGAACAGATCCAGGCGGCGGCGCGGAAGATCTGA
Translation:
MQQIHDLRRIDLNLLVVLDALLSERHVSRAAQRLAMSQPAVSHALGRLRELFGDPLLVRVKSRMQLTSLALE
LAPKLQASLDQVRGVIGGPAFEPVRSRRHFRLGMSDYGAWVVLPALLRQQQALAPGVSFGIVQEPRLETARQ
VAEGQLDCALGVFPLLPEGVRARRLFEERFVCVCRRSLFDRPDGLSLDRYLAARHVRVSLQDNPAEEVDSAL
EKRGLRRQVALTLPHFTVAPALLAGTDLVLTIAERILERLRLPEELAVCEPPLAIPRFDYVQIWRGDAEREA
AGAWLREQIQAAARKI*
AnnotationID:2607GeneID:2599
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 08:08:35
Gene Name:
Confidence Code:3
GeneProduct:putative LysR-family transcriptional activator
Cell Localization:()
Synonyms:toxR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03466,COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69208.1|AE016555_6 (AE016787) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 309

 Score =  261 bits (668), Expect = 3e-69
 Identities = 137/297 (46%), Positives = 194/297 (65%)

>dbj|BAC77727.1| (AB112549) LysR-family transcriptional activator [Burkholderia
           glumae]
          Length = 299

 Score =  218 bits (556), Expect = 3e-56
 Identities = 123/299 (41%), Positives = 177/299 (59%), Gaps = 2/299 (0%)

>emb|CAE35038.1| (BX640451) LysR family regulatory protein [Bordetella
           bronchiseptica]
          Length = 314

 Score =  204 bits (518), Expect = 7e-52
 Identities = 123/302 (40%), Positives = 175/302 (57%), Gaps = 2/302 (0%)








 
Structural Features:
pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues,  99.0% aligned
Score = 80.8 bits (199), Expect = 2e-16
Identities = 50/207 (24%), Positives = 78/207 (37%), Gaps = 1/207 (0%)

COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  98.7% aligned
Score = 93.1 bits (230), Expect = 4e-20
Identities = 69/296 (23%), Positives = 109/296 (36%), Gaps = 5/296 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5201




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22346




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32242




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2599_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2599
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4308
                           PA3321_tr
                           translation of PA3321
                           304
                           99.01
                           99.34
                           0
                           1511.0
     

     
     
126237
                           gb|AAG06709.1|AE004754_5
                           (AE004754) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           304
                           99.01
                           99.34
                           0
                           1511.0
     

     
     
126238
                           gb|AAN69208.1|AE016555_6
                           (AE016787) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           309
                           44.33
                           63.43
                           5
                           663.0
     

     
     
126240
                           dbj|BAC77727.1|
                           (AB112549) LysR-family transcriptional activator [Burkholderia glumae]
                           304
                           40.46
                           58.22
                           5
                           556.0
     

     
     
126243
                           dbj|BAB51091.1|
                           (AP003004) transcriptional regulator [Mesorhizobium loti]
                           315
                           39.68
                           54.28
                           22
                           456.0
     

     






      

          
GC ORFID: 45601How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3321Glimmer Score: 

          
Start: 3130232Stop: 3131146

          
Length: 915


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3321 translation of PA3321Homolog Bit Score 586.0

          
Other Homologs:  t_PA3321 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCAGATTCATGACCTACGCCGTATCGACCTCAACCTGCTGGTGGTGCTCGACGCGCTCCTCAGCGAG 
CGCCACGTGTCCCGCGCGGCGCAGCGCCTGGCCATGTCGCAGCCGGCGGTCAGCCACGCCCTCGGGCGTCTC 
CGCGAACTGTTCGGCGATCCGCTGCTGGTGCGGGTGAAAAGCCGCATGCAGTTGACCAGCCTGGCGCTGGAG 
CTGGCGCCGAAGCTCCAGGCCAGCCTCGACCAGGTGCGCGGGGTGATCGGCGGGCCGGCCTTCGAGCCGGTG 
CGCAGCCGGCGCCACTTCCGCCTGGGCATGTCCGACTACGGCGCCTGGGTGGTGCTGCCGGCGCTGCTGCGC 
CAGCAACAGGCGCTGGCGCCCGGGGTGAGCTTCGGGATAGTCCAGGAACCGCGCCTGGAAACCGCCCGGCAG 
GTCGCCGAAGGACAACTGGACTGCGCGCTGGGGGTATTCCCCCTGCTTCCGGAGGGCGTGCGCGCCAGGCGC 
CTGTTCGAGGAGCGTTTCGTCTGCGTCTGTCGGCGCAGCCTGTTCGACCGCCCCGACGGCCTGTCCCTCGAC 
CGCTACCTGGCGGCCCGCCACGTGCGCGTCTCGCTACAGGACAACCCGGCCGAGGAAGTCGACAGCGCCCTG 
GAAAAGCGCGGCCTGCGCCGGCAGGTAGCGCTGACCCTGCCGCACTTCACCGTGGCCCCGGCGCTGCTGGCC 
GGCACCGACCTGGTACTGACCATCGCCGAGCGCATCCTCGAACGCCTGCGGTTACCCGAGGAACTGGCGGTC 
TGCGAGCCGCCGCTGGCGATCCCGCGCTTCGACTACGTGCAGATCTGGCGCGGCGACGCCGAGCGCGAAGCG 
GCCGGCGCCTGGCTGCGGGAACAGATCCAGGCGGCGGCGCGGAAGATCTGA