ViewGene

Locus Name:
GeneID:
Location:

GeneID:2598
TrivialName: PA14_42100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42100
PAO1 Ortholog Locus:PA1735
Sequence Length:888
Protein Length:295
Start: 3757282
Stop: 3756395
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05124.1|AE004599_9 (AE004599) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 295/295 (100%), Positives = 295/295 (100%)
Sequence:
GTGCTCGCCGAGTTGTTCGCCGTGATGGCGCCCGTGCTGTTCGGCGCCGGTGTCGGTTATGTCTGGGTCCGT
CTCGGACACGCCTATCCGACCGAGTTCGTTTCGCGCATCGTGTTCAACATCGGTTCGCCATGCCTGATCCTC
GCCACCCTGGCGCATACCCGGGTGGACCTGCACAGCTTCGGCCGGATGGCCCTGGCCAGCGCGCTGATCTGC
GTCTGCATGGCTGCGCTGGGCTGGGCGGCGGCGCGCCTCGGGCGCCAGGAGTGGCAGGTGCTGGTGCCGGCC
TACAGCTTCCCGAATGTCGGCAACATGGGCCTGCCGGTGTGCCTGTATGCGTTCGGCGAGGCGGGGATGACC
CTGGCGGTGGCGTTCTACCTGATCATGTCGATCGGCAACTTCAGCCTCGGCGTGTTCTGGATGAGCGGCGAG
CGCTCCTGGCGCTCGCTGCTGGGCAATCCGATCCTGCTCAGCGTGTTGCTGGCCTTGTTGTTGATGGGGCTC
GACCTGCAACTGCCGCGCTGGATGGCGAATACCGTCGACCTGATGGCCGGGCTGACCATTCCGCTGATGCTG
ATCACCCTCGGCGTGTCCCTGGCCAGCATCCGTCCGCGGCAACTGGGCAATGGCTTCTTCTATGGCGGCCTG
CGTCTTCTGCTGGGCGCGCTGGTGGGCTGGTCGGTGGCGCTGGCGTTGCAATTGCCGCCGCTGGCGCAGGGG
GTGCTGGTGGTGCAATCGTCGATGCCGGTGGCGGTGTTCAACTATCTCTACGCCTTGCGCGGCAATCGTTCG
CCGGATCAGGTCGCCAGCCTGGTGCTGTGTTCGACCCTGCTGTCGTTCGCCTTCATTCCGCTGCTGCTGACC
TGGTGGCTGCCTGCGCTGCGCTGA
Translation:
MLAELFAVMAPVLFGAGVGYVWVRLGHAYPTEFVSRIVFNIGSPCLILATLAHTRVDLHSFGRMALASALIC
VCMAALGWAAARLGRQEWQVLVPAYSFPNVGNMGLPVCLYAFGEAGMTLAVAFYLIMSIGNFSLGVFWMSGE
RSWRSLLGNPILLSVLLALLLMGLDLQLPRWMANTVDLMAGLTIPLMLITLGVSLASIRPRQLGNGFFYGGL
RLLLGALVGWSVALALQLPPLAQGVLVVQSSMPVAVFNYLYALRGNRSPDQVASLVLCSTLLSFAFIPLLLT
WWLPALR*
AnnotationID:2606GeneID:2598
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 08:08:39
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA1735
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0679
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68691.1|AE016498_4 (AE016785) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 291

 Score =  320 bits (821), Expect = 5e-87
 Identities = 155/291 (53%), Positives = 213/291 (73%)

Structural Features:
COG0679, COG0679, Predicted permeases
CD-Length = 311 residues, 100.0% aligned
Score =  145 bits (368), Expect = 5e-36
Identities = 101/311 (32%), Positives = 152/311 (48%), Gaps = 17/311 (5%)
Genomic Context:
Comment:
ReferenceID:14635
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22344
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37158
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2598_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2598

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4307 PA1735_tr translation of PA1735 295 99.99 99.99 0 1511.0
126235 gb|AAG05124.1|AE004599_9 (AE004599) hypothetical protein PA1735 [Pseudomonas aeruginosa PAO1] 295 99.66 99.99 0 1508.0
126236 gb|AAN68691.1|AE016498_4 (AE016785) membrane protein, putative [Pseudomonas putida KT2440] 295 52.20 72.20 4 817.0
GC ORFID: 45600How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1735Glimmer Score:
Start: 1196627Stop: 1197514
Length: 888
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1735 translation of PA1735Homolog Bit Score 586.0
Other Homologs: t_PA1735 (ORF: GLIMMER)
GC ORF Sequence
GTGCTCGCCGAGTTGTTCGCCGTGATGGCGCCCGTGCTGTTCGGCGCCGGTGTCGGTTATGTCTGGGTCCGT
CTCGGACACGCCTATCCGACCGAGTTCGTTTCGCGCATCGTGTTCAACATCGGTTCGCCATGCCTGATCCTC
GCCACCCTGGCGCATACCCGGGTGGACCTGCACAGCTTCGGCCGGATGGCCCTGGCCAGCGCGCTGATCTGC
GTCTGCATGGCTGCGCTGGGCTGGGCGGCGGCGCGCCTCGGGCGCCAGGAGTGGCAGGTGCTGGTGCCGGCC
TACAGCTTCCCGAATGTCGGCAACATGGGCCTGCCGGTGTGCCTGTATGCGTTCGGCGAGGCGGGGATGACC
CTGGCGGTGGCGTTCTACCTGATCATGTCGATCGGCAACTTCAGCCTCGGCGTGTTCTGGATGAGCGGCGAG
CGCTCCTGGCGCTCGCTGCTGGGCAATCCGATCCTGCTCAGCGTGTTGCTGGCCTTGTTGTTGATGGGGCTC
GACCTGCAACTGCCGCGCTGGATGGCGAATACCGTCGACCTGATGGCCGGGCTGACCATTCCGCTGATGCTG
ATCACCCTCGGCGTGTCCCTGGCCAGCATCCGTCCGCGGCAACTGGGCAATGGCTTCTTCTATGGCGGCCTG
CGTCTTCTGCTGGGCGCGCTGGTGGGCTGGTCGGTGGCGCTGGCGTTGCAATTGCCGCCGCTGGCGCAGGGG
GTGCTGGTGGTGCAATCGTCGATGCCGGTGGCGGTGTTCAACTATCTCTACGCCTTGCGCGGCAATCGTTCG
CCGGATCAGGTCGCCAGCCTGGTGCTGTGTTCGACCCTGCTGTCGTTCGCCTTCATTCCGCTGCTGCTGACC
TGGTGGCTGCCTGCGCTGCGCTGA