ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2596

TrivialName: PA14_01690

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_01690

PAO1 Ortholog Locus: PA0138

Sequence Length: 981

Protein Length: 326

Start: 155072

Stop: 156052

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03528.1|AE004451_9 (AE004451) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1] Identities = 304/307 (99%), Positives = 306/307 (99%)

Sequence:

ATGGATATCGATCTGCTCGACAACCTGCTGTTCGCCATGGTCCGCACCGGTACTCCGCTGCTGCTGGTGGCG
CTGGGCGAACTGGTCTGCGAGAGAAGCGGAGTGCTCAACCTGGGCCAGGAGGGGATGATGCTGTTCGGCGCG
GTGATCGGCTTCATGGTCGCCTTCTCCAGCGGCAGCCTGTGGCTCGGCGTGCTCCTCGCGGTGCTCGCCGGC
ATGCTGTTGGCGGCGCTGTTCGCCGGGGTCGCCCTGTACCTGAACGCCAACCAGGTGGCCTGCGGCCTGGCG
CTGACCATCTTCGGCGTCGGCCTGTCGTCGTTCGTCGGCGCCGCCTGGGTCGGCAAGCCGCTGCAAGGGTTC
GCCCCGCTGGCGCTGCCGGTGCTGGGCGAGTTGCCGCTGCTCGGGCGCATGCTGTTCGCCCAGGACGCGCTG
GTCTACCTGAGCCTGGCGCTGTTCGCCGCGGTCGCCTGGATGCTCCTGCGCAGCCGCGCCGGGCTGGTTCTC
CAGGCGGTCGGCGAGAACCCCGACGCGGCCAGCGCGATGGGCCTGCCGGTGCTGCGCGTGCGCACCCTGGCG
GTGCTCTTCGGCGGCGCCATGGCCGGCCTGGCCGGTGCCTACCTGTCGCTGGCCTACACGCCGATGTGGGCG
GAGAACATGACCGCCGGACGCGGCTGGATCGCCCTGGCGCTGGTGGTCTTCGCCAGTTGGCGGGTGTTCCGC
GTGCTGCTCGGTGCCTGGTTGTTCGGCCTGGCCAGCATCCTGCACCTGGTGGCCCAGGGGATCGGGCTGTCG
ATTCCGGCCAACCTGCTGGCGATGCTGCCCTATGCGGCGACCATCCTGGTGCTGGTCCTGCTCTCCCGCGAT
GCCCTGCGCACCCGGCTGTATGCCCCGGTTTCCCtgGgCCAGccgtgGAAGgCcggGGCACTGACGAGGGCA
GGTTCTTCGATTAgTTGTTTTAACTATTTATATATTCTTCGATAG

Translation:

MDIDLLDNLLFAMVRTGTPLLLVALGELVCERSGVLNLGQEGMMLFGAVIGFMVAFSSGSLWLGVLLAVLAG
MLLAALFAGVALYLNANQVACGLALTIFGVGLSSFVGAAWVGKPLQGFAPLALPVLGELPLLGRMLFAQDAL
VYLSLALFAAVAWMLLRSRAGLVLQAVGENPDAASAMGLPVLRVRTLAVLFGGAMAGLAGAYLSLAYTPMWA
ENMTAGRGWIALALVVFASWRVFRVLLGAWLFGLASILHLVAQGIGLSIPANLLAMLPYAATILVLVLLSRD
ALRTRLYAPVSLGQPWKAGALTRAGSSISCFNYLYILR*

AnnotationID:2604 GeneID:2596

AnnotatorUID: diggins

Modification Date/Time: 2005-03-23 06:06:29

Gene Name:

Confidence Code: 3

GeneProduct: putative permease of ABC transporter

Cell Localization: ()

Synonyms: PA0138

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG1079

Secondary Functional Category(ies): membrane proteins

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAO54309.1| (AE016858) ABC transporter, permease protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 308

 Score =  521 bits (1343), Expect = e-147
 Identities = 263/307 (85%), Positives = 289/307 (94%)

>gb|AAN33757.1|AE014553_5 (AE014553) ABC transporter, permease protein [Brucella suis 1330]
          Length = 306

 Score =  334 bits (856), Expect = 5e-91
 Identities = 173/302 (57%), Positives = 219/302 (72%)

Structural Features:

COG1079, COG1079, Uncharacterized ABC-type transport system, permease component 
CD-Length = 304 residues,  99.3% aligned
Score =  272 bits (697), Expect = 4e-74
Identities = 149/307 (48%), Positives = 201/307 (65%), Gaps = 5/307 (1%)

Genomic Context:

Comment:

ReferenceID:5195

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:22340

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33517

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 2596_cdd.html

URL:

Homologs By Global Alignment

Gene ID:2596

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

4305 PA0138_tr translation of PA0138 326 93.25 93.86 18 1511.0

126211 gb|AAG03528.1|AE004451_9 (AE004451) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1] 326 93.25 93.86 18 1511.0

126212 gb|AAO54309.1| (AE016858) ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] 326 80.67 88.65 18 1341.0

126213 gb|AAN33757.1|AE014553_5 (AE014553) ABC transporter, permease protein [Brucella suis 1330] 326 53.06 67.17 20 851.0

126215 gb|AAK50325.1|U66917_94 (U66917) putative permease from ABC transporter [Pseudomonas sp. ADP] 326 52.76 67.17 19 819.0

GC ORFID: `45598`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0138`	Glimmer Score:
Start: `5956411`	Stop: `5957391`
Length: `981`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA0138 translation of PA0138`	Homolog Bit Score `587.0`
Other Homologs: `psyr_15may02_Scaffold2_revised_gene3593 (ORF: BLASTX 521.0), psyr_15may02_Scaffold3_revised_gene4336 (ORF: BLASTX 227.0), t_PA0138 (ORF: GLIMMER)`
GC ORF Sequence
ATGGATATCGATCTGCTCGACAACCTGCTGTTCGCCATGGTCCGCACCGGTACTCCGCTGCTGCTGGTGGCG CTGGGCGAACTGGTCTGCGAGAGAAGCGGAGTGCTCAACCTGGGCCAGGAGGGGATGATGCTGTTCGGCGCG GTGATCGGCTTCATGGTCGCCTTCTCCAGCGGCAGCCTGTGGCTCGGCGTGCTCCTCGCGGTGCTCGCCGGC ATGCTGTTGGCGGCGCTGTTCGCCGGGGTCGCCCTGTACCTGAACGCCAACCAGGTGGCCTGCGGCCTGGCG CTGACCATCTTCGGCGTCGGCCTGTCGTCGTTCGTCGGCGCCGCCTGGGTCGGCAAGCCGCTGCAAGGGTTC GCCCCGCTGGCGCTGCCGGTGCTGGGCGAGTTGCCGCTGCTCGGGCGCATGCTGTTCGCCCAGGACGCGCTG GTCTACCTGAGCCTGGCGCTGTTCGCCGCGGTCGCCTGGATGCTCCTGCGCAGCCGCGCCGGGCTGGTTCTC CAGGCGGTCGGCGAGAACCCCGACGCGGCCAGCGCGATGGGCCTGCCGGTGCTGCGCGTGCGCACCCTGGCG GTGCTCTTCGGCGGCGCCATGGCCGGCCTGGCCGGTGCCTACCTGTCGCTGGCCTACACGCCGATGTGGGCG GAGAACATGACCGCCGGACGCGGCTGGATCGCCCTGGCGCTGGTGGTCTTCGCCAGTTGGCGGGTGTTCCGC GTGCTGCTCGGTGCCTGGTTGTTCGGCCTGGCCAGCATCCTGCACCTGGTGGCCCAGGGGATCGGGCTGTCG ATTCCGGCCAACCTGCTGGCGATGCTGCCCTATGCGGCGACCATCCTGGTGCTGGTCCTGCTCTCCCGCGAT GCCCTGCGCACCCGGCTGTATGCCCCGGTTTCCCtgGgCCAGccgtgGAAGgCcggGGCACTGACGAGGGCA GGTTCTTCGATTAgTTGTTTTAACTATTTATATATTCTTCGATAG