ViewGene
Locus Name:
GeneID:
Location:

GeneID:2594
TrivialName: PA14_68920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68920
PAO1 Ortholog Locus:PA5218
Sequence Length:915
Protein Length:304
Start: 6148780
Stop: 6147866
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08603.1|AE004934_10 (AE004934) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 303/304 (99%), Positives = 303/304 (99%)
Sequence:
ATGCTCGACCTACGCCGCCTGCGCTGCTTCGCAGCCGTTGCCGAAACCCTGCATTTCGGCCGCGCCGCCCAG
CGCCTGCACATGGCGCAGCCGCCCTTGACCCGGCAGATATCCGCGCTGGAGGAAGAGCTGGGCTTTCGCCTG
TTCGACCGCTCCAGCCGGGCGGTGACCCTCACCGCCGAGGGCAGCCTGTTCCTGCCTTACGCACGCGGCCTG
CTGGACCAACTGGAGCGCACCGCCGGCTTCGCCCGCAAGCTGGCGCAGGGGCTGGCCGGCCACCTGACCCTC
GGCTACGCCAGCTCCATCGCCCTGTCGGACCTGTTCACCGAGGCGATCCGACTGTTCCGCGAGCGCCATCCG
GAGGTGCAACTGGAGCTGCTCGAAGGCGCTTCGGCAGCGCAATGGGCGCAGATCGCCGAAGGCGGCATCGAT
GTGGGGCTGGGGCGCCTGCCGCCGCCGGAAGGCCAGGTCGGCATCGAGGTGCTGGCCTTGGGCGGCGAGCCG
CTGGTGGTGGCCGTGCCCAACGGCGATCCGCTGGCGCGGCAAGAGCGGATCGACCTGTACGATCTGCGTGAT
CGGCCGCTGATCCTGTTTCCGCTGGACTACGGCTCCGGCCTCAACGAACTGATTGAGCGCCTCTACCGGAAG
GCCGGGCTGGCGCTGACGAGGGGACCGGCCGGACGCCAGATCACCTCGATCATCGCCCTGGTCGCGGCCGGC
CAGGGCGTTGCCCTGGTGCCGCGTTGCAGCACCGCGCTGGCCCGGGCCGGAGTCGTCTATCGCCCGCTGGCC
GAGCCCGAGGCGCTGGCCGATTTCCTCGTCTTCACCCGCCGCCATGGCCGCAGCGCCGCGGTGGAGGCGTTT
CTCGCCATCCTCGGCGGCCTGGACGCAGGCGAAACACCCCGACACATTTAG
Translation:
MLDLRRLRCFAAVAETLHFGRAAQRLHMAQPPLTRQISALEEELGFRLFDRSSRAVTLTAEGSLFLPYARGL
LDQLERTAGFARKLAQGLAGHLTLGYASSIALSDLFTEAIRLFRERHPEVQLELLEGASAAQWAQIAEGGID
VGLGRLPPPEGQVGIEVLALGGEPLVVAVPNGDPLARQERIDLYDLRDRPLILFPLDYGSGLNELIERLYRK
AGLALTRGPAGRQITSIIALVAAGQGVALVPRCSTALARAGVVYRPLAEPEALADFLVFTRRHGRSAAVEAF
LAILGGLDAGETPRHI*
AnnotationID:2602GeneID:2594
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 05:05:24
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA5218
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 100.0% aligned
Score =  127 bits (320), Expect = 1e-30
Identities = 110/304 (36%), Positives = 149/304 (49%), Gaps = 10/304 (3%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues,  97.6% aligned
Score =  110 bits (277), Expect = 2e-25
Identities = 83/209 (39%), Positives = 114/209 (54%), Gaps = 8/209 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5191




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22336




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34849




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2594_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2594
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4302
                           PA5218_tr
                           translation of PA5218
                           304
                           99.67
                           99.67
                           0
                           1513.0
     

     
     
126143
                           gb|AAG08603.1|AE004934_10
                           (AE004934) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           304
                           99.67
                           99.67
                           0
                           1513.0
     

     
     
126144
                           gb|AAN70636.1|AE016707_6
                           (AE016793) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           311
                           40.19
                           55.62
                           19
                           513.0
     

     
     
126146
                           gb|AAN68787.1|AE016510_9
                           (AE016785) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           311
                           38.58
                           54.01
                           19
                           433.0
     

     
     
126145
                           dbj|BAC91301.1|
                           (AP006579) LysR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421]
                           318
                           36.79
                           52.51
                           31
                           457.0
     

     






      

          
GC ORFID: 45596How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5218Glimmer Score: 

          
Start: 5412466Stop: 5411552

          
Length: 915


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5218 translation of PA5218Homolog Bit Score 587.0

          
Other Homologs:  t_PA5218 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCGACCTACGCCGCCTGCGCTGCTTCGCAGCCGTTGCCGAAACCCTGCATTTCGGCCGCGCCGCCCAG 
CGCCTGCACATGGCGCAGCCGCCCTTGACCCGGCAGATATCCGCGCTGGAGGAAGAGCTGGGCTTTCGCCTG 
TTCGACCGCTCCAGCCGGGCGGTGACCCTCACCGCCGAGGGCAGCCTGTTCCTGCCTTACGCACGCGGCCTG 
CTGGACCAACTGGAGCGCACCGCCGGCTTCGCCCGCAAGCTGGCGCAGGGGCTGGCCGGCCACCTGACCCTC 
GGCTACGCCAGCTCCATCGCCCTGTCGGACCTGTTCACCGAGGCGATCCGACTGTTCCGCGAGCGCCATCCG 
GAGGTGCAACTGGAGCTGCTCGAAGGCGCTTCGGCAGCGCAATGGGCGCAGATCGCCGAAGGCGGCATCGAT 
GTGGGGCTGGGGCGCCTGCCGCCGCCGGAAGGCCAGGTCGGCATCGAGGTGCTGGCCTTGGGCGGCGAGCCG 
CTGGTGGTGGCCGTGCCCAACGGCGATCCGCTGGCGCGGCAAGAGCGGATCGACCTGTACGATCTGCGTGAT 
CGGCCGCTGATCCTGTTTCCGCTGGACTACGGCTCCGGCCTCAACGAACTGATTGAGCGCCTCTACCGGAAG 
GCCGGGCTGGCGCTGACGAGGGGACCGGCCGGACGCCAGATCACCTCGATCATCGCCCTGGTCGCGGCCGGC 
CAGGGCGTTGCCCTGGTGCCGCGTTGCAGCACCGCGCTGGCCCGGGCCGGAGTCGTCTATCGCCCGCTGGCC 
GAGCCCGAGGCGCTGGCCGATTTCCTCGTCTTCACCCGCCGCCATGGCCGCAGCGCCGCGGTGGAGGCGTTT 
CTCGCCATCCTCGGCGGCCTGGACGCAGGCGAAACACCCCGACACATTTAG