ViewGene
Locus Name:
GeneID:
Location:

GeneID:2593
TrivialName: PA14_63230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63230
PAO1 Ortholog Locus:PA4783
Sequence Length:891
Protein Length:296
Start: 5643569
Stop: 5642679
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08169.1|AE004891_11 (AE004891) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 294/296 (99%), Positives = 296/296 (100%)
Sequence:
ATGCCTGCCCGTCGCATTCCGCTGTTGCTTTTCGGTGCGTTCTTCGCCCTGTACTTCATCTGGGGCTCCACT
TACCTGGCGATCCGCTTCGGCGTCGAGTCCTGGCCACCGATGCTGATGGCCGGGGTGCGCTTCGTCATCGCC
GGCGGCCTGATGTTCGCCTGGTTGCGCTGGCGCGGCGCGCCGCTGCCGACCTGGCGCGAGTGGCGCGGCGCG
GGGATCGTCGGAATCCTCCTGCTCAGTTGCGGCAACGGCGGGGTGACGGTGGCCGAGCACTGGGGCGTGTCT
TCCGGGGTGGCGGCCCTCGCGGTGGCTACGGTGCCGCTGTTCACTCTGCTGTTCAGCCAGTTGTTCGGCCAG
CGCAACACCACCCTGGAATGGGGCGGCATCGTGCTCGGGCTGTTCGGCATCGTCCTGCTCAACCTCGGTTCG
AACCTCCAGGCCAGCCCTGCCGGCGCCGGCCTGATCCTGTTCGCCGCCGCGTCCTGGGCCTTCGGCTCGGTG
TGGAGCCGGCGCCTGTCGCTGCCGGCCGGACCGATGGCCAGCGCCGCGGAAATGCTGGTCGGCGGCGCGGTG
CTGCTGGTCGGCAGTCTGGCCAGCGGTGAGCGCCTGGAGCATTGGCCGAGCACCAGCGGCTGGCTGGCGCTG
GTGTACCTGATCCTGTTCGGCTCGATCATCGCCTTCAGCGCCTACCAGTACCTGCTGCGCAACGTACGGCCG
GCGGCGGCCACCAGCTATGCCTACGTCAATCCGGCGGTGGCGGTGTTGCTCGGCACCCTGTTCGCCGGCGAG
CGGATCGGCGGTATCGAGGGGCTGGCGATGCTGGTGATCATCAGCGCCGTGGTGCTCATCGGCCTGCCCCAG
TGGCGCGCCAGCCGCGCCGCCGCCTGA
Translation:
MPARRIPLLLFGAFFALYFIWGSTYLAIRFGVESWPPMLMAGVRFVIAGGLMFAWLRWRGAPLPTWREWRGA
GIVGILLLSCGNGGVTVAEHWGVSSGVAALAVATVPLFTLLFSQLFGQRNTTLEWGGIVLGLFGIVLLNLGS
NLQASPAGAGLILFAAASWAFGSVWSRRLSLPAGPMASAAEMLVGGAVLLVGSLASGERLEHWPSTSGWLAL
VYLILFGSIIAFSAYQYLLRNVRPAAATSYAYVNPAVAVLLGTLFAGERIGGIEGLAMLVIISAVVLIGLPQ
WRASRAAA*
AnnotationID:2601GeneID:2593
AnnotatorUID: diggins
Modification Date/Time: 2005-02-09 12:12:52
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane protein
Cell Localization:()
Synonyms:yedA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70337.1|AE016675_7 (AE016791) transporter, putative [Pseudomonas putida KT2440]
          Length = 306

 Score =  450 bits (1158), Expect = e-126
 Identities = 225/291 (77%), Positives = 248/291 (85%), Gaps = 1/291 (0%)

>gb|AAM86536.1|AE013900_5 (AE013900) putative transmembrane protein [Yersinia pestis KIM]
          Length = 296

 Score =  357 bits (916), Expect = 5e-98
 Identities = 184/290 (63%), Positives = 223/290 (76%)

>gb|AAN80837.1|AE016762_90 (AE016762) Hypothetical transport protein yedA [Escherichia coli
           CFT073]
          Length = 306

 Score =  325 bits (834), Expect = 1e-88
 Identities = 170/282 (60%), Positives = 206/282 (73%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5189




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22334




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37701




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2593_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2593
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4301
                           PA4783_tr
                           translation of PA4783
                           296
                           99.32
                           99.99
                           0
                           1514.0
     

     
     
126124
                           gb|AAG08169.1|AE004891_11
                           (AE004891) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           296
                           99.32
                           99.99
                           0
                           1514.0
     

     
     
126125
                           gb|AAN70337.1|AE016675_7
                           (AE016791) transporter, putative [Pseudomonas putida KT2440]
                           306
                           73.52
                           81.37
                           10
                           1156.0
     

     
     
126126
                           gb|AAM86536.1|AE013900_5
                           (AE013900) putative transmembrane protein [Yersinia pestis KIM]
                           298
                           61.74
                           74.83
                           4
                           911.0
     

     
     
126127
                           emb|CAC90042.1|
                           (AJ414147) putative membrane protein [Yersinia pestis CO92]
                           298
                           61.74
                           74.83
                           4
                           911.0
     

     






      

          
GC ORFID: 45595How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4783Glimmer Score: 

          
Start: 4907249Stop: 4906359

          
Length: 891


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4783 translation of PA4783Homolog Bit Score 587.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5382 (ORF: BLASTX 426.0), t_PA4783 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGCCCGTCGCATTCCGCTGTTGCTTTTCGGTGCGTTCTTCGCCCTGTACTTCATCTGGGGCTCCACT 
TACCTGGCGATCCGCTTCGGCGTCGAGTCCTGGCCACCGATGCTGATGGCCGGGGTGCGCTTCGTCATCGCC 
GGCGGCCTGATGTTCGCCTGGTTGCGCTGGCGCGGCGCGCCGCTGCCGACCTGGCGCGAGTGGCGCGGCGCG 
GGGATCGTCGGAATCCTCCTGCTCAGTTGCGGCAACGGCGGGGTGACGGTGGCCGAGCACTGGGGCGTGTCT 
TCCGGGGTGGCGGCCCTCGCGGTGGCTACGGTGCCGCTGTTCACTCTGCTGTTCAGCCAGTTGTTCGGCCAG 
CGCAACACCACCCTGGAATGGGGCGGCATCGTGCTCGGGCTGTTCGGCATCGTCCTGCTCAACCTCGGTTCG 
AACCTCCAGGCCAGCCCTGCCGGCGCCGGCCTGATCCTGTTCGCCGCCGCGTCCTGGGCCTTCGGCTCGGTG 
TGGAGCCGGCGCCTGTCGCTGCCGGCCGGACCGATGGCCAGCGCCGCGGAAATGCTGGTCGGCGGCGCGGTG 
CTGCTGGTCGGCAGTCTGGCCAGCGGTGAGCGCCTGGAGCATTGGCCGAGCACCAGCGGCTGGCTGGCGCTG 
GTGTACCTGATCCTGTTCGGCTCGATCATCGCCTTCAGCGCCTACCAGTACCTGCTGCGCAACGTACGGCCG 
GCGGCGGCCACCAGCTATGCCTACGTCAATCCGGCGGTGGCGGTGTTGCTCGGCACCCTGTTCGCCGGCGAG 
CGGATCGGCGGTATCGAGGGGCTGGCGATGCTGGTGATCATCAGCGCCGTGGTGCTCATCGGCCTGCCCCAG 
TGGCGCGCCAGCCGCGCCGCCGCCTGA