ViewGene
Locus Name:
GeneID:
Location:

GeneID:2592
TrivialName: PA14_11170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11170
PAO1 Ortholog Locus:PA4075
Sequence Length:837
Protein Length:278
Start: 972093
Stop: 972929
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07462.1|AE004823_8 (AE004823) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 277/278 (99%), Positives = 277/278 (99%)
Sequence:
ATGGTAGCGGGCGGTCTCTGGGAGAACGGCGAAATGGCGACGGGCGACGAATTCGACGCGCTGCTGGTGGAA
GCCGGCCGCACACCGATGCGCGGCTGGGAATACGACTATGGCGGACGCATCCGCCTGGAACCGCCGCCATGG
GATTTCCCGGGGCGCATGCTGGAGCGCTGCCGGGCCGCCGCCAGCCTGCTGGACATGGGCACCGGCGGCGGC
GAATGGTTGAGCCGGCTGCCGTATCGTCCGCCGCTCACCGTGGCTACCGAGGGCTGGGCGCCCAACCTGGAG
ATTGCCCGGGGTCGCCTGGAGCCCCTGGGCATCCGCGTGGTCGAGGTGGAGGGCGCGCCGGACAACCATCGC
CAGGGCCGGGAGGGCGATGGCGGCGGGGCGTTGCCGTTCGCCGATGGCACCTTCGACCTGGTCGGCAACCGC
CACGAGTCCTATCTGCCATCGGAGGTCCGGCGGGTGCTGGCGCCCGGCGGCTGTTTCCTCACCCAGCAGGTG
GCCGGCGACTTCAACCGCGAGTTCTATGCGTTGCTCGGCGAACCGGCGCCGACGCCGGAGGCGCCGCACTGG
AACCTGGGTTTCGCCCGGGCCCAGCTGGAGGCCGCGGAGTTGCCGCCGGTGGCAGGCGGCGAAGGTTGGGAG
GTGTTGCACTTCGCCGATGTCGGCGCCCTGGCCTGGTACCTGTTGAACCTGCCCTGGGTATTTCCCGGTTTT
TCCTTCAGGCGCCACCGCGAGCGCCTGCGCGGCCTGCACGAGAGCGGCAAGCCGCTGGCGGTGCGGCAGTTC
CTCTTCTGGCTGGAGGCGCGCAGCCCCCAGGCCGCGCGCGGCTAG
Translation:
MVAGGLWENGEMATGDEFDALLVEAGRTPMRGWEYDYGGRIRLEPPPWDFPGRMLERCRAAASLLDMGTGGG
EWLSRLPYRPPLTVATEGWAPNLEIARGRLEPLGIRVVEVEGAPDNHRQGREGDGGGALPFADGTFDLVGNR
HESYLPSEVRRVLAPGGCFLTQQVAGDFNREFYALLGEPAPTPEAPHWNLGFARAQLEAAELPPVAGGEGWE
VLHFADVGALAWYLLNLPWVFPGFSFRRHRERLRGLHESGKPLAVRQFLFWLEARSPQAARG*
AnnotationID:2600GeneID:2592
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 06:06:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4075
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5187




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22332




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36824




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2592_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2592
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4300
                           PA4075_tr
                           translation of PA4075
                           278
                           99.64
                           99.64
                           0
                           1513.0
     

     
     
126122
                           gb|AAG07462.1|AE004823_8
                           (AE004823) hypothetical protein PA4075 [Pseudomonas aeruginosa PAO1]
                           278
                           99.64
                           99.64
                           0
                           1513.0
     

     
     
126123
                           gb|AAP26896.1|
                           (AE017033) conserved hypothetical protein [Bacillus anthracis str. Ames]
                           293
                           36.86
                           48.80
                           55
                           425.0
     

     






      

          
GC ORFID: 45594How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4075Glimmer Score: 

          
Start: 3981844Stop: 3981008

          
Length: 837


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4075 translation of PA4075Homolog Bit Score 587.0

          
Other Homologs:  t_PA4075 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTAGCGGGCGGTCTCTGGGAGAACGGCGAAATGGCGACGGGCGACGAATTCGACGCGCTGCTGGTGGAA 
GCCGGCCGCACACCGATGCGCGGCTGGGAATACGACTATGGCGGACGCATCCGCCTGGAACCGCCGCCATGG 
GATTTCCCGGGGCGCATGCTGGAGCGCTGCCGGGCCGCCGCCAGCCTGCTGGACATGGGCACCGGCGGCGGC 
GAATGGTTGAGCCGGCTGCCGTATCGTCCGCCGCTCACCGTGGCTACCGAGGGCTGGGCGCCCAACCTGGAG 
ATTGCCCGGGGTCGCCTGGAGCCCCTGGGCATCCGCGTGGTCGAGGTGGAGGGCGCGCCGGACAACCATCGC 
CAGGGCCGGGAGGGCGATGGCGGCGGGGCGTTGCCGTTCGCCGATGGCACCTTCGACCTGGTCGGCAACCGC 
CACGAGTCCTATCTGCCATCGGAGGTCCGGCGGGTGCTGGCGCCCGGCGGCTGTTTCCTCACCCAGCAGGTG 
GCCGGCGACTTCAACCGCGAGTTCTATGCGTTGCTCGGCGAACCGGCGCCGACGCCGGAGGCGCCGCACTGG 
AACCTGGGTTTCGCCCGGGCCCAGCTGGAGGCCGCGGAGTTGCCGCCGGTGGCAGGCGGCGAAGGTTGGGAG 
GTGTTGCACTTCGCCGATGTCGGCGCCCTGGCCTGGTACCTGTTGAACCTGCCCTGGGTATTTCCCGGTTTT 
TCCTTCAGGCGCCACCGCGAGCGCCTGCGCGGCCTGCACGAGAGCGGCAAGCCGCTGGCGGTGCGGCAGTTC 
CTCTTCTGGCTGGAGGCGCGCAGCCCCCAGGCCGCGCGCGGCTAG