ViewGene
Locus Name:
GeneID:
Location:

GeneID:2591
TrivialName: PA14_16870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16870
PAO1 Ortholog Locus:PA3672
Sequence Length:924
Protein Length:307
Start: 1446019
Stop: 1446942
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07060.1|AE004786_12 (AE004786) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 302/307 (98%), Positives = 304/307 (99%)
Sequence:
ATGATCGAAACAAGAAACCTCGGCAAACGCTTCGGCTCGCGGGTGGCGGTGGACGACCTGTCCTTCCAGGTG
GCGACGGGGGAGGTACTGGGCTTCCTCGGTCCGAACGGCGCCGGCAAGTCCACCACCATGAAGATGCTCACC
GGCTTCCTGGCGCCCAGCGCCGGCACCGCGAGCATCTTCGGCTTCGACATCCGCAGCCGCACGCTGCAGGCG
CAGCGGCTGATCGGCTACCTCCCGGAAGGTTCGCCCTGCTACGCGGAAATGACCGTGCAGGGCTTCCTCGAT
TTCATCGCCGAGATCCGTGGCTACCGTGGTGCCGGCAAGCGCGAGCGGGTCGCCCGGGCACTGGGGCTGCTG
GAACTGGATGAGGTGCGCCGGCAGACCATCGAAACCCTCTCCAAGGGCTTCCGCCGGCGTGTCGGCCTGGCC
CAGGCGATCCTCCACGAACCGCGGGCGCTGGTGCTCGACGAGCCCACCGACGGGCTCGATCCGAACCAGAAG
CACCAGGTCCGCGAACTGATCCGCGGCCTCGCGCAGGAGCGCATCGTGATCATCTCCACCCATATCCTCGAG
GAAGTCTCGGCGCTGTGCAGCCGCGCCCTGGTGATCGGCGGCGGGCGGCTGCTGGCGGACAGCACGCCGCTG
GAGCTGGCCAGCCGCTCGCGCTACCACCAGGCGGTGACGCTCTACAGCGACGACCCCCTGGATACCGTGGCG
CTGGCGGTGCTGCCGGGCGTGGCGGGCATCGAGGAGAACCCCGCCGAAGGCAGCCTGACCGTCCTGGCGCAG
CCGGGCGCGGTGATCTTTCCCCAGGTCAGCGGGCTGGTCGCCGAGCGCGGCTGGCGGATCCGCGAACTGGAC
GTGGAGCGCGGCCGGCTCGACGAGGTATTCCGCAACCTGACCCGGGGGACGGAGGCATGA
Translation:
MIETRNLGKRFGSRVAVDDLSFQVATGEVLGFLGPNGAGKSTTMKMLTGFLAPSAGTASIFGFDIRSRTLQA
QRLIGYLPEGSPCYAEMTVQGFLDFIAEIRGYRGAGKRERVARALGLLELDEVRRQTIETLSKGFRRRVGLA
QAILHEPRALVLDEPTDGLDPNQKHQVRELIRGLAQERIVIISTHILEEVSALCSRALVIGGGRLLADSTPL
ELASRSRYHQAVTLYSDDPLDTVALAVLPGVAGIEENPAEGSLTVLAQPGAVIFPQVSGLVAERGWRIRELD
VERGRLDEVFRNLTRGTEA*
AnnotationID:2599GeneID:2591
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 10:10:56
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter ATP-binding protein
Cell Localization:()
Synonyms:PA3672
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1131,COG4152,COG4555
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB77985.1| (AP003586) ATP-binding protein of ABC transporter [Nostoc sp. PCC
           7120]
          Length = 331

 Score =  236 bits (601), Expect = 2e-61
 Identities = 131/313 (41%), Positives = 189/313 (60%), Gaps = 13/313 (4%)

>gb|AAM25310.1| (AE013160) ABC-type multidrug transport system, ATPase component
           [Thermoanaerobacter tengcongensis]
          Length = 325

 Score =  227 bits (579), Expect = 6e-59
 Identities = 128/312 (41%), Positives = 193/312 (61%), Gaps = 5/312 (1%)








 
Structural Features:
COG1131, CcmA, ABC-type multidrug transport system, ATPase component 
[Defense mechanisms]
CD-Length = 293 residues,  99.0% aligned
Score =  254 bits (650), Expect = 2e-68
Identities = 108/307 (35%), Positives = 171/307 (55%), Gaps = 20/307 (6%)

COG4152, ABC-type uncharacterized transport system, ATPase component 
CD-Length = 300 residues,  98.7% aligned
Score =  183 bits (466), Expect = 4e-47
Identities = 100/307 (32%), Positives = 161/307 (52%), Gaps = 14/307 (4%)

COG4555, NatA, ABC-type Na+ transport system, ATPase component 
[Energy production and conversion / Inorganic ion transport and metabolism]
CD-Length = 245 residues,  99.2% aligned
Score =  180 bits (458), Expect = 4e-46
Identities = 83/243 (34%), Positives = 131/243 (53%), Gaps = 7/243 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5185




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22330




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31873




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2591_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2591
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4298
                           PA3672_tr
                           translation of PA3672
                           307
                           98.37
                           99.02
                           0
                           1512.0
     

     
     
126097
                           gb|AAG07060.1|AE004786_12
                           (AE004786) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           307
                           98.37
                           99.02
                           0
                           1512.0
     

     
     
4299
                           PA4037_tr
                           translation of PA4037
                           308
                           61.68
                           77.59
                           1
                           979.0
     

     
     
126098
                           gb|AAG07424.1|AE004820_9
                           (AE004820) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           308
                           61.68
                           77.59
                           1
                           979.0
     

     
     
126101
                           dbj|BAC09025.1|
                           (AP005374) ABC transporter ATP-binding protein [Thermosynechococcus elongatus BP-1]
                           323
                           39.93
                           57.27
                           16
                           581.0
     

     






      

          
GC ORFID: 45593How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3672Glimmer Score: 

          
Start: 3507918Stop: 3506995

          
Length: 924


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3672 translation of PA3672Homolog Bit Score 587.0

          
Other Homologs:  t_PA4037 (ORF: BLASTX 380.0), t_PA3672 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGAAACAAGAAACCTCGGCAAACGCTTCGGCTCGCGGGTGGCGGTGGACGACCTGTCCTTCCAGGTG 
GCGACGGGGGAGGTACTGGGCTTCCTCGGTCCGAACGGCGCCGGCAAGTCCACCACCATGAAGATGCTCACC 
GGCTTCCTGGCGCCCAGCGCCGGCACCGCGAGCATCTTCGGCTTCGACATCCGCAGCCGCACGCTGCAGGCG 
CAGCGGCTGATCGGCTACCTCCCGGAAGGTTCGCCCTGCTACGCGGAAATGACCGTGCAGGGCTTCCTCGAT 
TTCATCGCCGAGATCCGTGGCTACCGTGGTGCCGGCAAGCGCGAGCGGGTCGCCCGGGCACTGGGGCTGCTG 
GAACTGGATGAGGTGCGCCGGCAGACCATCGAAACCCTCTCCAAGGGCTTCCGCCGGCGTGTCGGCCTGGCC 
CAGGCGATCCTCCACGAACCGCGGGCGCTGGTGCTCGACGAGCCCACCGACGGGCTCGATCCGAACCAGAAG 
CACCAGGTCCGCGAACTGATCCGCGGCCTCGCGCAGGAGCGCATCGTGATCATCTCCACCCATATCCTCGAG 
GAAGTCTCGGCGCTGTGCAGCCGCGCCCTGGTGATCGGCGGCGGGCGGCTGCTGGCGGACAGCACGCCGCTG 
GAGCTGGCCAGCCGCTCGCGCTACCACCAGGCGGTGACGCTCTACAGCGACGACCCCCTGGATACCGTGGCG 
CTGGCGGTGCTGCCGGGCGTGGCGGGCATCGAGGAGAACCCCGCCGAAGGCAGCCTGACCGTCCTGGCGCAG 
CCGGGCGCGGTGATCTTTCCCCAGGTCAGCGGGCTGGTCGCCGAGCGCGGCTGGCGGATCCGCGAACTGGAC 
GTGGAGCGCGGCCGGCTCGACGAGGTATTCCGCAACCTGACCCGGGGGACGGAGGCATGA