ViewGene

Locus Name:
GeneID:
Location:

GeneID:2590
TrivialName: PA14_20980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20980
PAO1 Ortholog Locus:PA3330
Sequence Length:915
Protein Length:304
Start: 1807127
Stop: 1806213
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06718.1|AE004755_5 (AE004755) probable short chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 304/304 (100%), Positives = 304/304 (100%)
Sequence:
ATGTTATTCACCAGCAAACCTCTCTCGCCCCAGGGCCGCCACGTACTGATCACCGGCGCCTCCAGCGGCCTC
GGCCGGGAAACCGCGCTGCACCTGGCCGAACAGGGTTTCCAGGTGATCGCCGGGGTGCGCCGCCAGGAGGAT
GGCGAGCGCCTGGCGAACGCCTGCCCGTCCGGCCGGATCAGCACGCTGCTGATCGATGTCACCGACGAGGAA
TCCATTGGCCGGGCCGCCGCGCAGGTGGCGGAGAAAGTCGGCGATACCGGGCTCTGGGGCCTGGTGAACAAC
GCCGGGATCTGCATTTCCGCGCCGCTGGAATGCGTCTCCAGCGACCTGCTGCGGCGCCAGCTGGAAGTCAAC
CTGATCGGCCAGCTCGCGGTGACCCGGGCGATCCTGCCGCTGCTGCGCCGTGGCGGCGCGGCGCGCCTGGTG
AACGTCACCTCGGGCCTCGGCTCGGTCGCCATTCCCTACCTGGGCGCCTACTCCGCCGCGCAGTTCGCCAAG
GAGGGAGTGAGCGACGCCCTGCGCCGCGAGCTGGCGCCCATGGGCATCCAGGTCTCGGTGGTCAGCCCCGGG
GCGATCTGGACGCCGATCTGGGGCAAGATCGCCAGCGAGGGCGAGCGCGCCCTGGCCGACGCCCCCGACGCC
GTCGCCGACCTCTATCGCGATACCTACCTGCGCTTCCTCCAGGCCAACGAGGACGGCGCGCGCAACAGCGCG
ACCAAGCCCGCCGACGTCGCCGCCGCGGTGCATGCCGCGCTCACCGCGGCCAAGCCGCGGACCCGCTACCGG
GTCGGCGCCGACGTGCGCCGCGGCACCCTGCTGGCGCGGCTGCTGCCCGATAGCGTGATCGACGGGATGTTC
CGCCCCATCGTCACCGCCGCCCCGGCGGCGAAGGAGGAGCAACGTGCCTGA
Translation:
MLFTSKPLSPQGRHVLITGASSGLGRETALHLAEQGFQVIAGVRRQEDGERLANACPSGRISTLLIDVTDEE
SIGRAAAQVAEKVGDTGLWGLVNNAGICISAPLECVSSDLLRRQLEVNLIGQLAVTRAILPLLRRGGAARLV
NVTSGLGSVAIPYLGAYSAAQFAKEGVSDALRRELAPMGIQVSVVSPGAIWTPIWGKIASEGERALADAPDA
VADLYRDTYLRFLQANEDGARNSATKPADVAAAVHAALTAAKPRTRYRVGADVRRGTLLARLLPDSVIDGMF
RPIVTAAPAAKEEQRA*
AnnotationID:2598GeneID:2590
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 09:09:32
Gene Name:
Confidence Code:3
GeneProduct:putative short chain dehydrogenas
Cell Localization:()
Synonyms:PA3330
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4221,COG0300,COG1028
Secondary Functional Category(ies):biosynthesiis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAK24825.1| (AE005951) oxidoreductase, short-chain dehydrogenase/reductase
           family [Caulobacter crescentus CB15]
          Length = 283

 Score =  162 bits (410), Expect = 2e-39
 Identities = 107/280 (38%), Positives = 143/280 (51%), Gaps = 14/280 (5%)

>gb|AAN40990.1| (AF521588) oxidoreductase [Bradyrhizobium japonicum]
          Length = 285

 Score =  144 bits (364), Expect = 5e-34
 Identities = 98/279 (35%), Positives = 152/279 (54%), Gaps = 16/279 (5%)

Structural Features:
COG4221, Short-chain alcohol dehydrogenase of unknown specificity
CD-Length = 246 residues,  87.8% aligned
Score =  135 bits (341), Expect = 7e-33
Identities = 77/218 (35%), Positives = 115/218 (52%), Gaps = 11/218 (5%)

COG0300, DltE, Short-chain dehydrogenases of various substrate specificities 
CD-Length = 265 residues,  97.7% aligned
Score =  134 bits (338), Expect = 2e-32
Identities = 82/288 (28%), Positives = 129/288 (44%), Gaps = 32/288 (11%)

COG1028, FabG, Dehydrogenases with different specificities
CD-Length = 251 residues,  84.9% aligned
Score =  119 bits (300), Expect = 3e-28
Identities = 80/218 (36%), Positives = 118/218 (54%), Gaps = 12/218 (5%)
Genomic Context:
Comment:
ReferenceID:5183
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22328
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32234
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2590_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2590

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4297 PA3330_tr translation of PA3330 304 99.99 99.99 0 1513.0
126092 gb|AAG06718.1|AE004755_5 (AE004755) probable short chain dehydrogenase [Pseudomonas aeruginosa PAO1] 304 99.99 99.99 0 1513.0
126093 emb|CAE27479.1| (BX572599) putative oxidoreductase [Rhodopseudomonas palustris CGA009] 313 36.10 48.88 38 408.0
126094 dbj|BAC53452.1| (AP005964) dehydrogenase [Bradyrhizobium japonicum USDA 110] 344 29.94 40.98 92 311.0
126095 emb|CAD75124.1| (BX294145) glucose 1-dehydrogenase homolog [Pirellula sp.] [Pirellula sp. 1] 329 28.57 38.60 83 270.0
GC ORFID: 45592How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3330Glimmer Score:
Start: 3146805Stop: 3147719
Length: 915
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3330 translation of PA3330Homolog Bit Score 587.0
Other Homologs: t_PA3330 (ORF: GLIMMER)
GC ORF Sequence
ATGTTATTCACCAGCAAACCTCTCTCGCCCCAGGGCCGCCACGTACTGATCACCGGCGCCTCCAGCGGCCTC
GGCCGGGAAACCGCGCTGCACCTGGCCGAACAGGGTTTCCAGGTGATCGCCGGGGTGCGCCGCCAGGAGGAT
GGCGAGCGCCTGGCGAACGCCTGCCCGTCCGGCCGGATCAGCACGCTGCTGATCGATGTCACCGACGAGGAA
TCCATTGGCCGGGCCGCCGCGCAGGTGGCGGAGAAAGTCGGCGATACCGGGCTCTGGGGCCTGGTGAACAAC
GCCGGGATCTGCATTTCCGCGCCGCTGGAATGCGTCTCCAGCGACCTGCTGCGGCGCCAGCTGGAAGTCAAC
CTGATCGGCCAGCTCGCGGTGACCCGGGCGATCCTGCCGCTGCTGCGCCGTGGCGGCGCGGCGCGCCTGGTG
AACGTCACCTCGGGCCTCGGCTCGGTCGCCATTCCCTACCTGGGCGCCTACTCCGCCGCGCAGTTCGCCAAG
GAGGGAGTGAGCGACGCCCTGCGCCGCGAGCTGGCGCCCATGGGCATCCAGGTCTCGGTGGTCAGCCCCGGG
GCGATCTGGACGCCGATCTGGGGCAAGATCGCCAGCGAGGGCGAGCGCGCCCTGGCCGACGCCCCCGACGCC
GTCGCCGACCTCTATCGCGATACCTACCTGCGCTTCCTCCAGGCCAACGAGGACGGCGCGCGCAACAGCGCG
ACCAAGCCCGCCGACGTCGCCGCCGCGGTGCATGCCGCGCTCACCGCGGCCAAGCCGCGGACCCGCTACCGG
GTCGGCGCCGACGTGCGCCGCGGCACCCTGCTGGCGCGGCTGCTGCCCGATAGCGTGATCGACGGGATGTTC
CGCCCCATCGTCACCGCCGCCCCGGCGGCGAAGGAGGAGCAACGTGCCTGA