ViewGene
Locus Name:
GeneID:
Location:

GeneID:259
TrivialName: PA14_40200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40200
PAO1 Ortholog Locus:PA1880
Sequence Length:2196
Protein Length:731
Start: 3580273
Stop: 3582468
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05269.1|AE004614_3 (AE004614) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 729/731 (99%), Positives = 730/731 (99%)
Sequence:
ATGAACAGCAAGATCGATCTGAGCAACGCCCTGCCCGGCTCGCGCCGCGGCTTCCTCAAAGGCGCCGCGGTG
GTCGGCCTGACCATCGGCTTCCAGTGGAGCGGAGCCCGGCGCGCCCTCGCCGCGGCCCTGCCGGACGCCGGC
TTCGCGCCCAACGCCTTCCTGCGGATCGCCCCGGACGACAGTGTCACGGTGATCGCCAAGCACGTGGAGATG
GGCCAGGGCGCCTATACCGGTATCGCCACCATCGTCGCCGAGGAACTCGACGCGGACTGGAGCAAGGTCCGC
GTGGAAAGCGCGCCCGCCGACGCCAAGCGCTACGCCAACCTGGCCTTCGGCACCATGCAGGGCACCGGCGGC
AGTTCGGCGATGGCCAACTCCTGGATGCAATTGCGCGAGGCCGGGGCCAAGGCGCGCGCGATGCTGGTCGAG
GCCGCCGCCCGCCAGTGGCAGGTACCAGCCGCCGAACTGCGTACCCGCGACGGCTTCGTCGAACATCCGACC
AGCCAGCGCAAGGCCAGCTACGGTTCGCTGGCCGCTGCGGCGGCGGAACTGCCGGTGCCGGAAAACGTGCAA
TTGAAGGATCCCAAGGACTTCCGCCTGATCGGTCACCAGGCGCCGCGCGTCGACGTTCCCGGCAAGACCGAC
GGCAGTGCGCAATTCACCCTCGACGTCAGCCTGCCCGGCATGCTGGTCGCCCTGCTCCAGCGCCCGCCGCTG
TTCGGCGCTACGGTGAAATCGTTCGACGCCACGGCGACCAGGGCGATTCCGGGGGTGGTCGAGGTGGTCCAG
GTGCCGCACGGCGTGGCGGTGGTCGCCAAGGGCTTCTGGGCGGCGAAGCAAGGCCGCGACGCGCTCAAGGTC
GAGTGGGACGAGAGCAAGGCCGAGAAGCGTGGTTCCGAGGCGCTGATGGCGGAGTACCGCAAGCTCGCCGAG
CAACCCGGCAAGCCCGCGCGCAGGGACGGCGACGCCGCCAAGGCGGTGGCCGGGGCGACCCGCAGGATCGCC
GCCAGCTACGAGTTCCCGTTCCTCGCCCATGCGCCGATGGAGCCGCTGGACGCGGTGGTCAGGCTGACCGCC
GACAGCTGCGAGATCTGGGCCGGCGACCAATTCCAGACCGTCGACCAGGGCAACGCGGCGCGCACCGCCGGG
CTGAAGCCGGAGCAGGTGAAGATCAATACGCTCTACGCCGGCGGCAGCTTCGGCCGGCGCGCCAACGCCTGG
TCGGACTATATCGTCGAGGCGGTATCGATCGCCAAGGCGCTGGGCGCCAACGGCGTGCCGGTGAAGCTGCAA
TGGACCCGCGAGGACGACATCCACGGCGGCTTCTACCGGCCGATGTACTACCACCGGCTCGAAGCCGGGCTC
GACGCCGACGGCAAGCTGGTCGGCTGGCAACATCGCATCGTCGGCCAGTCGATCCTGGAAGGCACGCCGTTC
GCCGCGGTGATGGTCAAGGACGGCGTCGACGCCACCTCGGTGGAAGGCGCCGCCAACCTGCCCTATGCGGTG
CCCAATGTCTCGGTCGAGCTGAGCACCACCCAGGTCGGTGTACCGGTCCTGTGGTGGCGGGTGGTCGGCAGC
TCGCACACGGTCTACGCGGTGGAAGCGTTCATCGACGAGGCCGCGCAGGCCGCCGGCAAGGACCCCTACCTG
TTCCGCCGCGACCTGCTGGCAGAGCAGCCGCGCCTGCGCGGCGTGCTCGAACTGGCTGCGGAAAAGGCCGGC
TGGGACCCGTCCAGGCCGCTGCCCGCCGGGCGCGGGCGCGGGATCGCGGTGACCGAGGCATTCAAGACCTTC
GTCGCCCAGGTGGTCGAGGTCTCGGTGGACAAGGACGGCAAGCTGAAGGTCGAGCGGGTGGTCTGTGCGGTG
GACTGCGGCATCCCGATCAACCCGGACGTGATCGCCGCGCAGATGGAGGGCGGCATCGGCTTCGGCCTCGGC
GCGATCCTGCACAGCGCGATCACCCTGAAGGACGGCAAGGTCGAGCAGAACAACTTCGACGGCTACCAGGTG
CTGCGGATCGCCGAGATGCCCAAGGTCGAAGTGCACATCGTGCCCTCCGGCGAAGCGCCCACCGGGGTCGGC
GAACCCGGTGTGGCGCCCATCGGCCCGGCGCTGGCCAATGCGATCTTCGCCGCCACCGGGCAACGCCTGTAC
AACCTGCCCTTCCCCACCTCCTTCGCCAAGGCCTGA
Translation:
MNSKIDLSNALPGSRRGFLKGAAVVGLTIGFQWSGARRALAAALPDAGFAPNAFLRIAPDDSVTVIAKHVEM
GQGAYTGIATIVAEELDADWSKVRVESAPADAKRYANLAFGTMQGTGGSSAMANSWMQLREAGAKARAMLVE
AAARQWQVPAAELRTRDGFVEHPTSQRKASYGSLAAAAAELPVPENVQLKDPKDFRLIGHQAPRVDVPGKTD
GSAQFTLDVSLPGMLVALLQRPPLFGATVKSFDATATRAIPGVVEVVQVPHGVAVVAKGFWAAKQGRDALKV
EWDESKAEKRGSEALMAEYRKLAEQPGKPARRDGDAAKAVAGATRRIAASYEFPFLAHAPMEPLDAVVRLTA
DSCEIWAGDQFQTVDQGNAARTAGLKPEQVKINTLYAGGSFGRRANAWSDYIVEAVSIAKALGANGVPVKLQ
WTREDDIHGGFYRPMYYHRLEAGLDADGKLVGWQHRIVGQSILEGTPFAAVMVKDGVDATSVEGAANLPYAV
PNVSVELSTTQVGVPVLWWRVVGSSHTVYAVEAFIDEAAQAAGKDPYLFRRDLLAEQPRLRGVLELAAEKAG
WDPSRPLPAGRGRGIAVTEAFKTFVAQVVEVSVDKDGKLKVERVVCAVDCGIPINPDVIAAQMEGGIGFGLG
AILHSAITLKDGKVEQNNFDGYQVLRIAEMPKVEVHIVPSGEAPTGVGEPGVAPIGPALANAIFAATGQRLY
NLPFPTSFAKA*
AnnotationID:269GeneID:259
AnnotatorUID: diggins
Modification Date/Time: 2005-06-03 19:07:05
Gene Name:
Confidence Code:3
GeneProduct:putative exported oxidoreductase
Cell Localization:()
Synonyms:PA1880
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1529
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD14157.1| (AL646060) PUTATIVE DEHYDROGENASE LARGE CHAIN TRANSMEMBRANE PROTEIN
           [Ralstonia solanacearum]
          Length = 736

 Score =  848 bits (2192), Expect = 0.0
 Identities = 440/735 (59%), Positives = 542/735 (73%), Gaps = 22/735 (2%)

>emb|CAE32911.1| (BX640444) putative exported oxidoreductase subunit [Bordetella
           bronchiseptica]
          Length = 737

 Score =  776 bits (2003), Expect = 0.0
 Identities = 417/731 (57%), Positives = 512/731 (70%), Gaps = 22/731 (3%)

>gb|AAK22009.1| (AE005677) isoquinoline 1-oxidoreductase, beta subunit [Caulobacter
           crescentus CB15]
          Length = 730

 Score =  638 bits (1645), Expect = 0.0
 Identities = 368/743 (49%), Positives = 477/743 (64%), Gaps = 27/743 (3%)







 
Structural Features:
COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, 
large subunit CoxL/CutL homologs 
[Energy production and conversion]
CD-Length = 731 residues,  98.8% aligned
Score =  425 bits (1093), Expect = 1e-119
Identities = 228/753 (30%), Positives = 302/753 (40%), Gaps = 66/753 (8%)







   
Genomic Context:






   
Comment:


















    ReferenceID:521




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17663




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37053




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:259_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:259
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
435
                           PA1880_tr
                           translation of PA1880
                           731
                           99.72
                           99.86
                           0
                           3739.0
     

     
     
23635
                           gb|AAG05269.1|AE004614_3
                           (AE004614) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           731
                           99.72
                           99.86
                           0
                           3739.0
     

     
     
23636
                           emb|CAD14157.1|
                           (AL646060) PUTATIVE DEHYDROGENASE LARGE CHAIN TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           747
                           59.17
                           72.95
                           27
                           2213.0
     

     
     
23637
                           emb|CAE32911.1|
                           (BX640444) putative exported oxidoreductase subunit [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           749
                           56.60
                           69.69
                           30
                           2031.0
     

     
     
23638
                           emb|CAE36653.1|
                           (BX640427) putative exported oxidoreductase subunit [Bordetella parapertussis]
                           749
                           56.47
                           69.55
                           30
                           2024.0
     

     






      

          
GC ORFID: 43261How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1880Glimmer Score: 

          
Start: 1373637Stop: 1371442

          
Length: 2196


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1880 translation of PA1880Homolog Bit Score 1444.0

          
Other Homologs:  t_PA2378 (ORF: BLASTX 469.0), t_PA1880 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAGCAAGATCGATCTGAGCAACGCCCTGCCCGGCTCGCGCCGCGGCTTCCTCAAAGGCGCCGCGGTG 
GTCGGCCTGACCATCGGCTTCCAGTGGAGCGGAGCCCGGCGCGCCCTCGCCGCGGCCCTGCCGGACGCCGGC 
TTCGCGCCCAACGCCTTCCTGCGGATCGCCCCGGACGACAGTGTCACGGTGATCGCCAAGCACGTGGAGATG 
GGCCAGGGCGCCTATACCGGTATCGCCACCATCGTCGCCGAGGAACTCGACGCGGACTGGAGCAAGGTCCGC 
GTGGAAAGCGCGCCCGCCGACGCCAAGCGCTACGCCAACCTGGCCTTCGGCACCATGCAGGGCACCGGCGGC 
AGTTCGGCGATGGCCAACTCCTGGATGCAATTGCGCGAGGCCGGGGCCAAGGCGCGCGCGATGCTGGTCGAG 
GCCGCCGCCCGCCAGTGGCAGGTACCAGCCGCCGAACTGCGTACCCGCGACGGCTTCGTCGAACATCCGACC 
AGCCAGCGCAAGGCCAGCTACGGTTCGCTGGCCGCTGCGGCGGCGGAACTGCCGGTGCCGGAAAACGTGCAA 
TTGAAGGATCCCAAGGACTTCCGCCTGATCGGTCACCAGGCGCCGCGCGTCGACGTTCCCGGCAAGACCGAC 
GGCAGTGCGCAATTCACCCTCGACGTCAGCCTGCCCGGCATGCTGGTCGCCCTGCTCCAGCGCCCGCCGCTG 
TTCGGCGCTACGGTGAAATCGTTCGACGCCACGGCGACCAGGGCGATTCCGGGGGTGGTCGAGGTGGTCCAG 
GTGCCGCACGGCGTGGCGGTGGTCGCCAAGGGCTTCTGGGCGGCGAAGCAAGGCCGCGACGCGCTCAAGGTC 
GAGTGGGACGAGAGCAAGGCCGAGAAGCGTGGTTCCGAGGCGCTGATGGCGGAGTACCGCAAGCTCGCCGAG 
CAACCCGGCAAGCCCGCGCGCAGGGACGGCGACGCCGCCAAGGCGGTGGCCGGGGCGACCCGCAGGATCGCC 
GCCAGCTACGAGTTCCCGTTCCTCGCCCATGCGCCGATGGAGCCGCTGGACGCGGTGGTCAGGCTGACCGCC 
GACAGCTGCGAGATCTGGGCCGGCGACCAATTCCAGACCGTCGACCAGGGCAACGCGGCGCGCACCGCCGGG 
CTGAAGCCGGAGCAGGTGAAGATCAATACGCTCTACGCCGGCGGCAGCTTCGGCCGGCGCGCCAACGCCTGG 
TCGGACTATATCGTCGAGGCGGTATCGATCGCCAAGGCGCTGGGCGCCAACGGCGTGCCGGTGAAGCTGCAA 
TGGACCCGCGAGGACGACATCCACGGCGGCTTCTACCGGCCGATGTACTACCACCGGCTCGAAGCCGGGCTC 
GACGCCGACGGCAAGCTGGTCGGCTGGCAACATCGCATCGTCGGCCAGTCGATCCTGGAAGGCACGCCGTTC 
GCCGCGGTGATGGTCAAGGACGGCGTCGACGCCACCTCGGTGGAAGGCGCCGCCAACCTGCCCTATGCGGTG 
CCCAATGTCTCGGTCGAGCTGAGCACCACCCAGGTCGGTGTACCGGTCCTGTGGTGGCGGGTGGTCGGCAGC 
TCGCACACGGTCTACGCGGTGGAAGCGTTCATCGACGAGGCCGCGCAGGCCGCCGGCAAGGACCCCTACCTG 
TTCCGCCGCGACCTGCTGGCAGAGCAGCCGCGCCTGCGCGGCGTGCTCGAACTGGCTGCGGAAAAGGCCGGC 
TGGGACCCGTCCAGGCCGCTGCCCGCCGGGCGCGGGCGCGGGATCGCGGTGACCGAGGCATTCAAGACCTTC 
GTCGCCCAGGTGGTCGAGGTCTCGGTGGACAAGGACGGCAAGCTGAAGGTCGAGCGGGTGGTCTGTGCGGTG 
GACTGCGGCATCCCGATCAACCCGGACGTGATCGCCGCGCAGATGGAGGGCGGCATCGGCTTCGGCCTCGGC 
GCGATCCTGCACAGCGCGATCACCCTGAAGGACGGCAAGGTCGAGCAGAACAACTTCGACGGCTACCAGGTG 
CTGCGGATCGCCGAGATGCCCAAGGTCGAAGTGCACATCGTGCCCTCCGGCGAAGCGCCCACCGGGGTCGGC 
GAACCCGGTGTGGCGCCCATCGGCCCGGCGCTGGCCAATGCGATCTTCGCCGCCACCGGGCAACGCCTGTAC 
AACCTGCCCTTCCCCACCTCCTTCGCCAAGGCCTGA