ViewGene
Locus Name:
GeneID:
Location:

GeneID:2589
TrivialName: PA14_21780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21780
PAO1 Ortholog Locus:PA3264
Sequence Length:936
Protein Length:311
Start: 1895160
Stop: 1894225
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06652.1|AE004749_1 (AE004749) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 306/311 (98%), Positives = 309/311 (99%)
Sequence:
ATGCGTGCCCTGACCGCCCTGAGCCGTTTCGTCAGCGCCAGCTTCCCGTTCTGGGTCCTGCTGTTCGCCATC
CTCGCCTTCTTCCGGCCGGCCTGGTTCCTCCCGCTCACCGTCGCCATCGCGCCGCTGCTCGGCCTGGTGATG
TTCGGCATGGGCCTGACGCTCAAGGGCGAAGACTTCCGCGAGGTCGCCCGGCACCCCATACGGGTGCTGATC
GGCGTGCTGGCCCAGTTCGTCATCATGCCCGGCCTGGCCTGGCTGCTCTGCCGCCTGTTGCAGTTGCCGGCG
GAGATCGCGGTGGGCGTGATCCTGGTCGGCTGCTGCCCCGGCGGCACCGCTTCCAACGTGATGACCTGGCTG
TCCCGTGGCGATGTCGCCCTGTCGGTGGCGATCACCTCGGTGACCACCCTGCTCGCCCCGCTGGTCACGCCG
GCGCTGGTCTGGCTGCTGGCCTCGGCCTGGCTGCCGGTGTCATTCGCGGCGATGTTCCTGTCGATCCTCCAG
GTGGTGCTGATGCCCATCGCCCTCGGCCTGCTGGCACAGCGCCTGCTCGGCGAGCGCACCCGGCAGGTGGCG
GAGGTGCTGCCGCTGGTCTCGGTATTCAGCATCGTGGTGATCATCGCCGCGGTGGTGGCCGCCAGCCAGGCG
CGGATCGCCGAGTCCGGCCTGCTGATCATGGCCGTGGTGATGCTGCACAACGGCTTCGGCCTGTCGCTCGGC
TATCTCACCGGCAAGCTGACCGGCATGCCGCTGGCACAGCGCAAGGCCCTGGCCATCGAAGTCGGCATGCAG
AACTCGGGGCTCGGCGCGGCGCTGGCCAACGCCCATTTCTCGCCCCTGGCAGCGGTGCCCAGCGCGCTGTTC
AGCGTCTGGCACAATCTCTCCGGTTCGCTGCTGGCCGCCCTGTTCCGGCGTATGGAAGATACGCCGCGTTGA
Translation:
MRALTALSRFVSASFPFWVLLFAILAFFRPAWFLPLTVAIAPLLGLVMFGMGLTLKGEDFREVARHPIRVLI
GVLAQFVIMPGLAWLLCRLLQLPAEIAVGVILVGCCPGGTASNVMTWLSRGDVALSVAITSVTTLLAPLVTP
ALVWLLASAWLPVSFAAMFLSILQVVLMPIALGLLAQRLLGERTRQVAEVLPLVSVFSIVVIIAAVVAASQA
RIAESGLLIMAVVMLHNGFGLSLGYLTGKLTGMPLAQRKALAIEVGMQNSGLGAALANAHFSPLAAVPSALF
SVWHNLSGSLLAALFRRMEDTPR*
AnnotationID:2597GeneID:2589
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 17:05:14
Gene Name:
Confidence Code:3
GeneProduct:putative sodium/bile acid symporter
Cell Localization:()
Synonyms:PA3264
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative transmembrane transport protein
Functional Category Confidence Code:5
COGs:pfam01758,COG0385
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57364.1| (AE016870) sodium/bile acid symporter family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 315

 Score =  445 bits (1145), Expect = e-124
 Identities = 227/308 (73%), Positives = 264/308 (85%)

>emb|CAE32359.1| (BX640442) putative transmembrane transport protein [Bordetella
           bronchiseptica]
          Length = 352

 Score =  408 bits (1048), Expect = e-113
 Identities = 211/308 (68%), Positives = 248/308 (80%)

>gb|AAN30588.1|AE014461_9 (AE014461) sodium/bile acid transporter family protein [Brucella
           suis 1330]
          Length = 318

 Score =  380 bits (975), Expect = e-105
 Identities = 195/308 (63%), Positives = 241/308 (78%)






 
Structural Features:
pfam01758, SBF, Sodium Bile acid symporter family. 
CD-Length = 186 residues,  99.5% aligned
Score =  104 bits (262), Expect = 1e-23
Identities = 78/185 (42%), Positives = 117/185 (63%), Gaps = 5/185 (2%)

COG0385, Predicted Na+-dependent transporter
CD-Length = 319 residues,  97.8% aligned
Score =  264 bits (677), Expect = 8e-72
Identities = 160/312 (51%), Positives = 199/312 (63%), Gaps = 1/312 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5181




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22326




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32279




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2589_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2589
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4296
                           PA3264_tr
                           translation of PA3264
                           311
                           98.39
                           99.35
                           0
                           1514.0
     

     
     
126057
                           gb|AAG06652.1|AE004749_1
                           (AE004749) probable transporter [Pseudomonas aeruginosa PAO1]
                           311
                           98.39
                           99.35
                           0
                           1514.0
     

     
     
126058
                           gb|AAO57364.1|
                           (AE016870) sodium/bile acid symporter family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           315
                           72.06
                           83.80
                           4
                           1143.0
     

     
     
126061
                           gb|AAN30588.1|AE014461_9
                           (AE014461) sodium/bile acid transporter family protein [Brucella suis 1330]
                           318
                           61.32
                           75.78
                           7
                           972.0
     

     
     
126062
                           gb|AAL51527.1|
                           (AE009477) SODIUM/BILE ACID COTRANSPORTER HOMOLOG, SBF FAMILY [Brucella melitensis 16M]
                           318
                           61.00
                           75.47
                           7
                           965.0
     

     






      

          
GC ORFID: 45591How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3264Glimmer Score: 

          
Start: 3058771Stop: 3059706

          
Length: 936


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3264 translation of PA3264Homolog Bit Score 587.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1525 (ORF: BLASTX 443.0), t_PA3264 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGCCCTGACCGCCCTGAGCCGTTTCGTCAGCGCCAGCTTCCCGTTCTGGGTCCTGCTGTTCGCCATC 
CTCGCCTTCTTCCGGCCGGCCTGGTTCCTCCCGCTCACCGTCGCCATCGCGCCGCTGCTCGGCCTGGTGATG 
TTCGGCATGGGCCTGACGCTCAAGGGCGAAGACTTCCGCGAGGTCGCCCGGCACCCCATACGGGTGCTGATC 
GGCGTGCTGGCCCAGTTCGTCATCATGCCCGGCCTGGCCTGGCTGCTCTGCCGCCTGTTGCAGTTGCCGGCG 
GAGATCGCGGTGGGCGTGATCCTGGTCGGCTGCTGCCCCGGCGGCACCGCTTCCAACGTGATGACCTGGCTG 
TCCCGTGGCGATGTCGCCCTGTCGGTGGCGATCACCTCGGTGACCACCCTGCTCGCCCCGCTGGTCACGCCG 
GCGCTGGTCTGGCTGCTGGCCTCGGCCTGGCTGCCGGTGTCATTCGCGGCGATGTTCCTGTCGATCCTCCAG 
GTGGTGCTGATGCCCATCGCCCTCGGCCTGCTGGCACAGCGCCTGCTCGGCGAGCGCACCCGGCAGGTGGCG 
GAGGTGCTGCCGCTGGTCTCGGTATTCAGCATCGTGGTGATCATCGCCGCGGTGGTGGCCGCCAGCCAGGCG 
CGGATCGCCGAGTCCGGCCTGCTGATCATGGCCGTGGTGATGCTGCACAACGGCTTCGGCCTGTCGCTCGGC 
TATCTCACCGGCAAGCTGACCGGCATGCCGCTGGCACAGCGCAAGGCCCTGGCCATCGAAGTCGGCATGCAG 
AACTCGGGGCTCGGCGCGGCGCTGGCCAACGCCCATTTCTCGCCCCTGGCAGCGGTGCCCAGCGCGCTGTTC 
AGCGTCTGGCACAATCTCTCCGGTTCGCTGCTGGCCGCCCTGTTCCGGCGTATGGAAGATACGCCGCGTTGA