ViewGene
Locus Name:
GeneID:
Location:

GeneID:2588
TrivialName: PA14_23700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23700
PAO1 Ortholog Locus:PA3124
Sequence Length:912
Protein Length:303
Start: 2061055
Stop: 2061966
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06512.1|AE004736_9 (AE004736) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 301/303 (99%), Positives = 302/303 (99%)
Sequence:
ATGGCCCGGCTTGAAGTCAACCGTTCCGGCGAACTGGAGGTGTTTGCCCGGGTCGTCGAGTCGGGGGGCTTT
TCCGCCGCCGCTCGACGTTGCGGCATGACGCCCTCGGCAGTCAGCAAGCTGATCACCCGGCTCGAACAGCGC
CTGGGAACCCGCTTGCTGAACCGCTCCACCCGTCAATTGCAACTGACGCCCGAGGGATGCACGTTCTACGAG
CGCGGGGTGCGTATCCTGGCCGACCTGGAGGAAGCCGAGCGGTGTGCGAGCGAAAACGCGGCGCCGCGCGGG
CGCTTGCGAGTCAACGCCAACGTGCCTTTCGGACATCATTTCCTGCTGCCGCTGGTGCCCGAGTTCCTCGCG
CAGCATCCCGAGGTGACGCTGGATATCGTGCTGACCGATGAGGTCGTCGACATCCTCGAGCAGCGCACCGAC
GTGGCCGTGCGCGCGGGGCCGCTGAAAAGCTCGAGCCTGGTGGCGCGCAAGCTGGGGAGCACGCGCATGCTG
ATCGTCGGTGCGCCGGCCTACCTGGCCCGGCATGGCATGCCGGCCACGCCGCAGGCGCTGCTGGGGCACAAC
CGCCTCGGCGCCAACTATGTGCGAACGCGCTCCGGCTGGCCGCTGCGGGACGCCGGCGAGGAACTCGTGGTG
CCGTTGTCGGGCAACGCCCAGGCCAGCGATGGCGAGGCGCTGCGCCGTCTGGCCGTGGCCGGCCTGGGCCTG
GCGCGGCTGGCCGCGTTCCAGGTGCGCGAGGACATAGCCGCCGGTCGCCTGATTCCCGTGCTCGAGGCATAC
AACCCGGGCGACCTGGAGGAAGTCCACGCCGTCTACGTCGGCCAGGGCGGCTATCTGCCGCTGCGCGTGCGG
GCGTTCCTGAACTTTCTGGCGGAGCGCGTCGATATGAGCCAGGGTTGA
Translation:
MARLEVNRSGELEVFARVVESGGFSAAARRCGMTPSAVSKLITRLEQRLGTRLLNRSTRQLQLTPEGCTFYE
RGVRILADLEEAERCASENAAPRGRLRVNANVPFGHHFLLPLVPEFLAQHPEVTLDIVLTDEVVDILEQRTD
VAVRAGPLKSSSLVARKLGSTRMLIVGAPAYLARHGMPATPQALLGHNRLGANYVRTRSGWPLRDAGEELVV
PLSGNAQASDGEALRRLAVAGLGLARLAAFQVREDIAAGRLIPVLEAYNPGDLEEVHAVYVGQGGYLPLRVR
AFLNFLAERVDMSQG*
AnnotationID:2596GeneID:2588
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 07:07:48
Gene Name:
Confidence Code:3
GeneProduct:transcriptional regulator, LysR family
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03466,COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC47417.1| (AL591792) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinorhizobium
           meliloti]
          Length = 318

 Score =  395 bits (1014), Expect = e-109
 Identities = 200/303 (66%), Positives = 240/303 (79%)

>gb|AAL45385.1| (AE009387) transcriptional regulator, LysR family [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 301

 Score =  382 bits (980), Expect = e-105
 Identities = 194/296 (65%), Positives = 225/296 (76%)

>dbj|BAC45517.1| (AP005935) transcriptional regulatory protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 325

 Score =  357 bits (916), Expect = 5e-98
 Identities = 181/303 (59%), Positives = 233/303 (76%), Gaps = 4/303 (1%)






 
Structural Features:
pfam03466, LysR_substrate, LysR substrate binding domain. 
CD-Length = 209 residues, 100.0% aligned
Score =  101 bits (253), Expect = 1e-22
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 6/212 (2%)

COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  96.6% aligned
Score =  138 bits (349), Expect = 6e-34
Identities = 105/294 (35%), Positives = 149/294 (50%), Gaps = 13/294 (4%)








   
Genomic Context:






   
Comment:


















    ReferenceID:5179




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22324




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32403




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2588_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2588
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4294
                           PA3124_tr
                           translation of PA3124
                           303
                           99.33
                           99.66
                           0
                           1512.0
     

     
     
126017
                           gb|AAG06512.1|AE004736_9
                           (AE004736) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           303
                           99.33
                           99.66
                           0
                           1512.0
     

     
     
126019
                           gb|AAL45385.1|
                           (AE009387) transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           305
                           64.26
                           74.42
                           6
                           977.0
     

     
     
126020
                           gb|AAK88854.1|
                           (AE008228) AGR_L_567p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           305
                           64.26
                           74.42
                           6
                           977.0
     

     
     
126018
                           emb|CAC47417.1|
                           (AL591792) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinorhizobium meliloti]
                           318
                           62.89
                           75.47
                           15
                           1014.0
     

     






      

          
GC ORFID: 45590How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3124Glimmer Score: 

          
Start: 2892876Stop: 2891965

          
Length: 912


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3124 translation of PA3124Homolog Bit Score 587.0

          
Other Homologs:  t_PA1859 (ORF: BLASTX 223.0), t_PA3124 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCCGGCTTGAAGTCAACCGTTCCGGCGAACTGGAGGTGTTTGCCCGGGTCGTCGAGTCGGGGGGCTTT 
TCCGCCGCCGCTCGACGTTGCGGCATGACGCCCTCGGCAGTCAGCAAGCTGATCACCCGGCTCGAACAGCGC 
CTGGGAACCCGCTTGCTGAACCGCTCCACCCGTCAATTGCAACTGACGCCCGAGGGATGCACGTTCTACGAG 
CGCGGGGTGCGTATCCTGGCCGACCTGGAGGAAGCCGAGCGGTGTGCGAGCGAAAACGCGGCGCCGCGCGGG 
CGCTTGCGAGTCAACGCCAACGTGCCTTTCGGACATCATTTCCTGCTGCCGCTGGTGCCCGAGTTCCTCGCG 
CAGCATCCCGAGGTGACGCTGGATATCGTGCTGACCGATGAGGTCGTCGACATCCTCGAGCAGCGCACCGAC 
GTGGCCGTGCGCGCGGGGCCGCTGAAAAGCTCGAGCCTGGTGGCGCGCAAGCTGGGGAGCACGCGCATGCTG 
ATCGTCGGTGCGCCGGCCTACCTGGCCCGGCATGGCATGCCGGCCACGCCGCAGGCGCTGCTGGGGCACAAC 
CGCCTCGGCGCCAACTATGTGCGAACGCGCTCCGGCTGGCCGCTGCGGGACGCCGGCGAGGAACTCGTGGTG 
CCGTTGTCGGGCAACGCCCAGGCCAGCGATGGCGAGGCGCTGCGCCGTCTGGCCGTGGCCGGCCTGGGCCTG 
GCGCGGCTGGCCGCGTTCCAGGTGCGCGAGGACATAGCCGCCGGTCGCCTGATTCCCGTGCTCGAGGCATAC 
AACCCGGGCGACCTGGAGGAAGTCCACGCCGTCTACGTCGGCCAGGGCGGCTATCTGCCGCTGCGCGTGCGG 
GCGTTCCTGAACTTTCTGGCGGAGCGCGTCGATATGAGCCAGGGTTGA