ViewGene
Locus Name:
GeneID:
Location:

GeneID:2586
TrivialName: PA14_30750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30750
PAO1 Ortholog Locus:PA2579
Sequence Length:867
Protein Length:288
Start: 2667877
Stop: 2668743
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05967.1|AE004686_5 (AE004686) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 286/288 (99%), Positives = 286/288 (99%)
Sequence:
ATGTGTCCTTGCCCTCACTCCCAGGCCCAGGGAGAAACGGACGGAGAGGCTGAGTGGCATAACGCCGCCCTG
GACTTCACCCATGCGATGAGCTACGGCGATTACCTGAAGCTGGACAAGGTCCTGGACGCCCAGTTCCCGCTT
TCGCCCGACCACAACGAAATGCTGTTCATCATCCAGCACCAGACCTCGGAGCTATGGATGAAGCTGATGCTC
CACGAACTGCGGGCCGCCCGGGAGCACGTCAAGTCAGGCAAGCTCGGTCCGGCGCTGAAAATGCTCGCCAGG
GTCTCGCGGATCTTCGACCAGCTGGTACACGCCTGGGCGGTGCTGGCCACCATGACGCCGACCGAGTACAAC
ACCATCCGCCCGTACCTGGGCCAGTCTTCCGGTTTCCAGTCCTACCAGTACCGCGAGATCGAATTCATCCTC
GGCAACAAGAACGCCACCCTGCTCAAGCCCCATGCTCACCGCGCCGAGCTGCTGGCGGCCCTGGAGCAGGCC
CTGCATACGCCGTCGCTATACGACGAAGCGATCCGCCTGATGGCCGCCCAGGGGTTGCCGGTAAGCCAGGAG
CGGCTCGTCCGGGACGCGGCGGCCGGCACCTGTTACGAGGCCTCGGTGGAGGCGGCGTGGCGACAGGTCTAC
CAGACGCCGGAGCGCTACTGGGACCTGTATCAGTTGGCGGAAAAACTGATCGACCTGGAGGATTCGTTCCGC
CAGTGGCGCTTCCGTCACGTGACCACGGTGGAGCGCATCATCGGTTTCAAACCCGGCACGGGCGGAACCGAG
GGCGTGGGGTATCTGCGCAGCATGCTCGATACCATCCTCTTCCCCGAACTGTGGCGGCTCCGTTCCAACCTG
TAG
Translation:
MCPCPHSQAQGETDGEAEWHNAALDFTHAMSYGDYLKLDKVLDAQFPLSPDHNEMLFIIQHQTSELWMKLML
HELRAAREHVKSGKLGPALKMLARVSRIFDQLVHAWAVLATMTPTEYNTIRPYLGQSSGFQSYQYREIEFIL
GNKNATLLKPHAHRAELLAALEQALHTPSLYDEAIRLMAAQGLPVSQERLVRDAAAGTCYEASVEAAWRQVY
QTPERYWDLYQLAEKLIDLEDSFRQWRFRHVTTVERIIGFKPGTGGTEGVGYLRSMLDTILFPELWRLRSNL
*
AnnotationID:2594GeneID:2586
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 07:07:43
Gene Name:
Confidence Code:3
GeneProduct:putative tryptophan oxygenase
Cell Localization:()
Synonyms:PA2579
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3483,pfam03301
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD14288.1| (AL646060) PUTATIVE OXYGENASE OXIDOREDUCTASE PROTEIN [Ralstonia
           solanacearum]
          Length = 294

 Score =  399 bits (1026), Expect = e-111
 Identities = 193/285 (67%), Positives = 229/285 (80%), Gaps = 5/285 (1%)

>gb|AAL65288.1| (AY072690) putative tryptophan 2,3-dioxygenase [Pseudomonas
           fluorescens]
          Length = 284

 Score =  373 bits (958), Expect = e-103
 Identities = 184/289 (63%), Positives = 220/289 (76%), Gaps = 6/289 (2%)

>emb|CAE33752.1| (BX640447) putative tryptophan oxygenase [Bordetella
           bronchiseptica]
          Length = 284

 Score =  362 bits (928), Expect = 2e-99
 Identities = 177/267 (66%), Positives = 207/267 (77%)








 
Structural Features:
COG3483, TDO2, Tryptophan 2,3-dioxygenase (vermilion) [Amino acid transport and metabolism]
CD-Length = 262 residues, 100.0% aligned
Score =  435 bits (1119), Expect = 3e-123
Identities = 192/262 (73%), Positives = 220/262 (83%)

pfam03301, Trp_dioxygenase, Tryptophan 2,3-dioxygenase.
CD-Length = 346 residues,  96.0% aligned
Score =  231 bits (589), Expect = 1e-61
Identities = 113/332 (34%), Positives = 152/332 (45%), Gaps = 73/332 (21%)









   
Genomic Context:






   
Comment:


















    ReferenceID:5175




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22320




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33146




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2586_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2586
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4292
                           PA2579_tr
                           translation of PA2579
                           288
                           99.30
                           99.30
                           0
                           1512.0
     

     
     
125994
                           gb|AAG05967.1|AE004686_5
                           (AE004686) hypothetical protein PA2579 [Pseudomonas aeruginosa PAO1]
                           288
                           99.30
                           99.30
                           0
                           1512.0
     

     
     
125995
                           emb|CAD14288.1|
                           (AL646060) PUTATIVE OXYGENASE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           299
                           64.54
                           76.58
                           16
                           1026.0
     

     
     
125996
                           gb|AAL65288.1|
                           (AY271621) QbsF [Pseudomonas fluorescens]
                           289
                           63.66
                           76.12
                           6
                           964.0
     

     
     
125999
                           emb|CAE37149.1|
                           (BX640428) putative tryptophan oxygenase [Bordetella parapertussis]
                           288
                           62.84
                           73.95
                           4
                           929.0
     

     






      

          
GC ORFID: 45588How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2579Glimmer Score: 

          
Start: 2286049Stop: 2285183

          
Length: 867


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2579 translation of PA2579Homolog Bit Score 587.0

          
Other Homologs:  t_PA2579 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTGTCCTTGCCCTCACTCCCAGGCCCAGGGAGAAACGGACGGAGAGGCTGAGTGGCATAACGCCGCCCTG 
GACTTCACCCATGCGATGAGCTACGGCGATTACCTGAAGCTGGACAAGGTCCTGGACGCCCAGTTCCCGCTT 
TCGCCCGACCACAACGAAATGCTGTTCATCATCCAGCACCAGACCTCGGAGCTATGGATGAAGCTGATGCTC 
CACGAACTGCGGGCCGCCCGGGAGCACGTCAAGTCAGGCAAGCTCGGTCCGGCGCTGAAAATGCTCGCCAGG 
GTCTCGCGGATCTTCGACCAGCTGGTACACGCCTGGGCGGTGCTGGCCACCATGACGCCGACCGAGTACAAC 
ACCATCCGCCCGTACCTGGGCCAGTCTTCCGGTTTCCAGTCCTACCAGTACCGCGAGATCGAATTCATCCTC 
GGCAACAAGAACGCCACCCTGCTCAAGCCCCATGCTCACCGCGCCGAGCTGCTGGCGGCCCTGGAGCAGGCC 
CTGCATACGCCGTCGCTATACGACGAAGCGATCCGCCTGATGGCCGCCCAGGGGTTGCCGGTAAGCCAGGAG 
CGGCTCGTCCGGGACGCGGCGGCCGGCACCTGTTACGAGGCCTCGGTGGAGGCGGCGTGGCGACAGGTCTAC 
CAGACGCCGGAGCGCTACTGGGACCTGTATCAGTTGGCGGAAAAACTGATCGACCTGGAGGATTCGTTCCGC 
CAGTGGCGCTTCCGTCACGTGACCACGGTGGAGCGCATCATCGGTTTCAAACCCGGCACGGGCGGAACCGAG 
GGCGTGGGGTATCTGCGCAGCATGCTCGATACCATCCTCTTCCCCGAACTGTGGCGGCTCCGTTCCAACCTG 
TAG