ViewGene
Locus Name:
GeneID:
Location:

GeneID:2583
TrivialName: PA14_58990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58990
PAO1 Ortholog Locus:
Sequence Length:1347
Protein Length:448
Start: 5256118
Stop: 5257464
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD13464.1| (AJ421512) replicative helicase dnaB2 [Pseudomonas sp. SLT2001]
Identities = 252/444 (56%), Positives = 322/444 (72%), Gaps = 12/444 (2%)
Sequence:
GTGAGTGTTCTGGAACTTACGCCGCCGCACTCCGTCGAGGCGGAGCAAGGGGTACTCGGCGGCCTGATGCTG
GACAACGCGGCATGGGACATTGTCGGCGATCAGTTGCAGAAGGAGGACTTCTTCCGGCATGAGCATCGGCTG
ATCTTCACCGCCATCAGCGAGTTGGCCGCGAAGGATGCTCCGTTTGATGTCGTGACTGTGTCGGAAGCGATC
GAAGACCTTCCAGAAGCTGGCGGGCTGGNCTACCTCGGCCAGttccccaacAACACGCCCTCCGTGGCCAAT
ATCGAGGCTTACGCGCAGATCGTTCGCGATCGGGCACACCTGCGGCAGCTGATGTCTCTCGGGCACCACTGC
ACCAGGACCGCCTCgAACCACCAGGCAAATCCCTCTGAGGTTCAGGAGGAGATTGagCAGAAGCTGTTCGcc
cTTGGCCAGGACCACCACAACGCCGatttcGTCGATATCAACAAGAGTCTCACGAAGATCGTCGACACCATC
GATTACCGCTTCAACAACAACGTGACGGTAACGGGGGTCCCGACTGGCCTGAAGGATCTCGACGCACTCACC
GGCGGACTACAGAAGTCGGATCTCATCATCGTCGGTGCCCGCCCCGCGATGGGCAAAACGTCGTTTGCCCTC
AACCTGGTCGACACCGCGCTCCAGAGCGACCAACAGAAGTCTGTTCAGGTGTACAGCATGGAGATGCCGGCA
GAGCAGTTGCTGTTCAGGCTTGCCGCCCTGTTCGGCCACCTGGACCTGGGCAAGCTGATGAAGGGCCAACTG
CAAGAAGAGGATTGGCCCAGACTGTCTGGCGCGATCCAGCGCATAAACGACTATGGCAGCCGGCTGGTCATC
AACGATCAGGGCAACCTCACGCCGACAGAGCTGCGCGCCAAGGTTCGCCGGGCGGCCAGGAAGTACGGACAC
CCCGCGCTGATATTGGTCGACTACCTGCAACTGATGAGTTGCCCAGGCCTGGAGAATCGAGCCACCGAGATC
TCGGAAATCTCCCGCTCGCTGAAAGCGCTGGCCAAGGAGATGGACTGTCCCGTCGTAGCTCTATCCCAGCTA
AATCGCGGCCTAGAGAACCGGACGAACAAGCGACCGAACTGCGCGGACCTACGAGAGAGCGGCGCAATCGAG
CAGGACGCGGACGTGATCATGTTCGTGTACCGCGACGAGGTCTACCACCCCAACACCGAGGCCAAGGGCATC
GCCGAAATCATCATCGGCAAGTATCGCAACGGTCCGATCGGCACCGTCCACACCGCCTTCATCGCCAACCAG
ACCCGCTTTGCCGACCTGGCGCCGGGGACCTGGCAAGGAGCCCATGCATGA
Translation:
MSVLELTPPHSVEAEQGVLGGLMLDNAAWDIVGDQLQKEDFFRHEHRLIFTAISELAAKDAPFDVVTVSEAI
EDLPEAGGLXYLGQFPNNTPSVANIEAYAQIVRDRAHLRQLMSLGHHCTRTASNHQANPSEVQEEIEQKLFA
LGQDHHNADFVDINKSLTKIVDTIDYRFNNNVTVTGVPTGLKDLDALTGGLQKSDLIIVGARPAMGKTSFAL
NLVDTALQSDQQKSVQVYSMEMPAEQLLFRLAALFGHLDLGKLMKGQLQEEDWPRLSGAIQRINDYGSRLVI
NDQGNLTPTELRAKVRRAARKYGHPALILVDYLQLMSCPGLENRATEISEISRSLKALAKEMDCPVVALSQL
NRGLENRTNKRPNCADLRESGAIEQDADVIMFVYRDEVYHPNTEAKGIAEIIIGKYRNGPIGTVHTAFIANQ
TRFADLAPGTWQGAHA*
AnnotationID:2591GeneID:2583
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:33
Gene Name:RL109
Confidence Code:3
GeneProduct:Putative DNA helicase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0305, cd00984, pfam03796
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
CP9 (pseudomonas aeruginosa strain c, plasmid pKLC102)






 
Structural Features:
COG0305, DnaB, Replicative DNA helicase. Score: 455, E-value: 6e-129
cd00984, DnaB_C, DnaB helicase C terminal domain. Score: 310, E-value: 2e-85
pfam03796, DnaB_C, DnaB-like helicase C terminal domain. Score: 245, E-value: 9e-66






   
Genomic Context:






   
Comment:


















    ReferenceID:14633




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22314




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2583
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
125859
                           emb|CAD13464.1|
                           (AJ421512) replicative helicase dnaB2 [Pseudomonas sp. SLT2001]
                           469
                           53.94
                           69.50
                           26
                           1222.0
     

     
     
4288
                           PA4931_tr
                           translation of PA4931
                           469
                           53.09
                           68.65
                           26
                           1209.0
     

     
     
125860
                           gb|AAG08316.1|AE004906_4
                           (AE004906) replicative DNA helicase [Pseudomonas aeruginosa PAO1]
                           469
                           53.09
                           68.65
                           26
                           1209.0
     

     
     
125861
                           gb|AAK00230.1|AF229443_1
                           (AF229443) replicative DNA helicase DnaB [Pseudomonas aeruginosa]
                           469
                           53.09
                           68.65
                           26
                           1209.0
     

     
     
125864
                           gb|AAO58357.1|
                           (AE016873) replicative DNA helicase [Pseudomonas syringae pv. tomato str. DC3000]
                           469
                           52.87
                           68.86
                           26
                           1201.0
     

     






      

          
GC ORFID: 45585How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold10_revised_gene1568Glimmer Score: 

          
Start: 4519797Stop: 4521143

          
Length: 1347


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold10_revised_gene1568 related to: gi|12642370|gb|AAK00231.1|AF229444_1 (AF229444) replicative DNA helicase DnaB [Pseudomonas putida]Homolog Bit Score 588.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3443 (ORF: BLASTX 471.0), t_PA4931 (ORF: BLASTX 470.0), psyr_15may02_Scaffold10_revised_gene1568 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGTGTTCTGGAACTTACGCCGCCGCACTCCGTCGAGGCGGAGCAAGGGGTACTCGGCGGCCTGATGCTG 
GACAACGCGGCATGGGACATTGTCGGCGATCAGTTGCAGAAGGAGGACTTCTTCCGGCATGAGCATCGGCTG 
ATCTTCACCGCCATCAGCGAGTTGGCCGCGAAGGATGCTCCGTTTGATGTCGTGACTGTGTCGGAAGCGATC 
GAAGACCTTCCAGAAGCTGGCGGGCTGGNCTACCTCGGCCAGttccccaacAACACGCCCTCCGTGGCCAAT 
ATCGAGGCTTACGCGCAGATCGTTCGCGATCGGGCACACCTGCGGCAGCTGATGTCTCTCGGGCACCACTGC 
ACCAGGACCGCCTCgAACCACCAGGCAAATCCCTCTGAGGTTCAGGAGGAGATTGagCAGAAGCTGTTCGcc 
cTTGGCCAGGACCACCACAACGCCGatttcGTCGATATCAACAAGAGTCTCACGAAGATCGTCGACACCATC 
GATTACCGCTTCAACAACAACGTGACGGTAACGGGGGTCCCGACTGGCCTGAAGGATCTCGACGCACTCACC 
GGCGGACTACAGAAGTCGGATCTCATCATCGTCGGTGCCCGCCCCGCGATGGGCAAAACGTCGTTTGCCCTC 
AACCTGGTCGACACCGCGCTCCAGAGCGACCAACAGAAGTCTGTTCAGGTGTACAGCATGGAGATGCCGGCA 
GAGCAGTTGCTGTTCAGGCTTGCCGCCCTGTTCGGCCACCTGGACCTGGGCAAGCTGATGAAGGGCCAACTG 
CAAGAAGAGGATTGGCCCAGACTGTCTGGCGCGATCCAGCGCATAAACGACTATGGCAGCCGGCTGGTCATC 
AACGATCAGGGCAACCTCACGCCGACAGAGCTGCGCGCCAAGGTTCGCCGGGCGGCCAGGAAGTACGGACAC 
CCCGCGCTGATATTGGTCGACTACCTGCAACTGATGAGTTGCCCAGGCCTGGAGAATCGAGCCACCGAGATC 
TCGGAAATCTCCCGCTCGCTGAAAGCGCTGGCCAAGGAGATGGACTGTCCCGTCGTAGCTCTATCCCAGCTA 
AATCGCGGCCTAGAGAACCGGACGAACAAGCGACCGAACTGCGCGGACCTACGAGAGAGCGGCGCAATCGAG 
CAGGACGCGGACGTGATCATGTTCGTGTACCGCGACGAGGTCTACCACCCCAACACCGAGGCCAAGGGCATC 
GCCGAAATCATCATCGGCAAGTATCGCAACGGTCCGATCGGCACCGTCCACACCGCCTTCATCGCCAACCAG 
ACCCGCTTTGCCGACCTGGCGCCGGGGACCTGGCAAGGAGCCCATGCATGA