ViewGene

Locus Name:
GeneID:
Location:

GeneID:2581
TrivialName: PA14_64890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64890
PAO1 Ortholog Locus:PA4912
Sequence Length:915
Protein Length:304
Start: 5783121
Stop: 5782207
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08297.1|AE004904_5 (AE004904) probable permease of ABC branched chain amino acid transporter [Pseudomonas aeruginosa PAO1]
Identities = 304/304 (100%), Positives = 304/304 (100%)
Sequence:
ATGGACGGCATCTTCCTCCAGCAAATGATCAACGGGCTGACCCTCGGCTCGGTCTACGGCCTCATCGCCATC
GGCTACACCATGGTCTACGGCATCATCGGCATGATCAACTTCGCCCACGGCGAGGTGTACATGATCTCCGCC
TACCTGTCGGCCATCGCCCTTGCCCTGCTGGCCTTCTTCGGCCTGCAGAACTTCCCGCTGCTGATCCTCGGC
ACCTTGCTGTTCACCGTGCTGGTGACCTGCACCTACGGCTGGGTGATCGAGCGCATCGCCTACAAGCCGCTG
CGCAACTCCACGCGCCTGGCGCCGCTGATCTCGGCGATCGGCATGTCGCTGATCCTGCAGAACTACGTGCAG
GTGGCACAGGGACCGCGCCAGCAGGGGATCCCGACCCTGCTCGACGGCGCCCTGAAATTCCACGTCGGCGAC
GGTTTCGTCCAGCTCACCTACACCAAGCTGTTCATCCTGATCGCTTCGCTGATCGGCATGGCAGTGCTGACC
TACGTGATCCGCTACACCAAGCTCGGGCGCATGTGCCGGGCGACCCAGCAGGACCGCAAGATGGCTTCGATC
CTGGGGATCAACACCGACCGGGTGATCTCCTACGTGTTCGTCATCGGCGCCGCGATGGCCGCCCTGGCCGGG
GTGCTGATCACCATGAACTACGGCACCTTCGACTTCTACGCCGGCTTCATCATCGGCATCAAGGCGTTCACC
GCGGCGGTGCTCGGCGGCATCGGCTCGCTGCCCGGGGCGATGCTCGGCGGCCTGGTGCTGGGAGTGGCCGAG
GCGCAGTTCTCGGGGATGGTCAACACCGACTACAAGGACGTGTTCGCCTTCTCGTTGCTGGTACTGATCCTG
ATCTTCCGTCCCCAGGGCCTGCTCGGCCGCCCGCAGATCGCCAAGGTGTAA
Translation:
MDGIFLQQMINGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLSAIALALLAFFGLQNFPLLILG
TLLFTVLVTCTYGWVIERIAYKPLRNSTRLAPLISAIGMSLILQNYVQVAQGPRQQGIPTLLDGALKFHVGD
GFVQLTYTKLFILIASLIGMAVLTYVIRYTKLGRMCRATQQDRKMASILGINTDRVISYVFVIGAAMAALAG
VLITMNYGTFDFYAGFIIGIKAFTAAVLGGIGSLPGAMLGGLVLGVAEAQFSGMVNTDYKDVFAFSLLVLIL
IFRPQGLLGRPQIAKV*
AnnotationID:2589GeneID:2581
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 15:03:29
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC branched chain amino acid transporter
Cell Localization:()
Synonyms:braD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0559
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58346.1| (AE016873) high-affinity branched-chain amino acid ABC transporter,
           permease protein BraD [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 304

 Score =  526 bits (1354), Expect = e-149
 Identities = 258/304 (84%), Positives = 291/304 (95%)

>gb|AAN70435.1|AE016684_14 (AE016792) branched-chain amino acid ABC transporter, permease
           protein [Pseudomonas putida KT2440]
          Length = 304

 Score =  520 bits (1339), Expect = e-147
 Identities = 255/304 (83%), Positives = 291/304 (95%)

>gb|AAM84012.1|AE013643_1 (AE013643) high-affinity branched-chain amino acid ABC transport
           system membrane permease [Yersinia pestis KIM]
          Length = 308

 Score =  343 bits (879), Expect = 9e-94
 Identities = 177/301 (58%), Positives = 221/301 (73%), Gaps = 1/301 (0%)

Structural Features:
COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components 
[Amino acid transport and metabolism]
CD-Length = 297 residues,  99.7% aligned
Score =  225 bits (576), Expect = 4e-60
Identities = 143/304 (47%), Positives = 201/304 (66%), Gaps = 9/304 (2%)
Genomic Context:
Comment:
other possible gene name: livH
ReferenceID:5165
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22310
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35139
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2581_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2581

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4285 PA4912_tr translation of PA4912 304 99.99 99.99 0 1515.0
125803 gb|AAG08297.1|AE004904_5 (AE004904) probable permease of ABC branched chain amino acid transporter [Pseudomonas aeruginosa PAO1] 304 99.99 99.99 0 1515.0
125804 gb|AAO58346.1| (AE016873) high-affinity branched-chain amino acid ABC transporter, permease protein BraD [Pseudomonas syringae pv. tomato str. DC3000] 304 84.86 95.72 0 1354.0
125805 gb|AAN70435.1|AE016684_14 (AE016792) branched-chain amino acid ABC transporter, permease protein [Pseudomonas putida KT2440] 304 83.88 95.72 0 1339.0
125811 emb|CAC93274.1| (AJ414159) high-affinity branched-chain amino acid transport system, permease protein [Yersinia pestis CO92] 308 57.46 71.75 4 873.0
GC ORFID: 45583How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4912Glimmer Score:
Start: 5046802Stop: 5045888
Length: 915
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4912 translation of PA4912Homolog Bit Score 588.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7643 (ORF: BLASTX 525.0), psyr_15may02_Scaffold5_revised_gene6074 (ORF: BLASTX 344.0), t_PA1073 (ORF: BLASTX 331.0), t_PA4912 (ORF: GLIMMER)
GC ORF Sequence
ATGGACGGCATCTTCCTCCAGCAAATGATCAACGGGCTGACCCTCGGCTCGGTCTACGGCCTCATCGCCATC
GGCTACACCATGGTCTACGGCATCATCGGCATGATCAACTTCGCCCACGGCGAGGTGTACATGATCTCCGCC
TACCTGTCGGCCATCGCCCTTGCCCTGCTGGCCTTCTTCGGCCTGCAGAACTTCCCGCTGCTGATCCTCGGC
ACCTTGCTGTTCACCGTGCTGGTGACCTGCACCTACGGCTGGGTGATCGAGCGCATCGCCTACAAGCCGCTG
CGCAACTCCACGCGCCTGGCGCCGCTGATCTCGGCGATCGGCATGTCGCTGATCCTGCAGAACTACGTGCAG
GTGGCACAGGGACCGCGCCAGCAGGGGATCCCGACCCTGCTCGACGGCGCCCTGAAATTCCACGTCGGCGAC
GGTTTCGTCCAGCTCACCTACACCAAGCTGTTCATCCTGATCGCTTCGCTGATCGGCATGGCAGTGCTGACC
TACGTGATCCGCTACACCAAGCTCGGGCGCATGTGCCGGGCGACCCAGCAGGACCGCAAGATGGCTTCGATC
CTGGGGATCAACACCGACCGGGTGATCTCCTACGTGTTCGTCATCGGCGCCGCGATGGCCGCCCTGGCCGGG
GTGCTGATCACCATGAACTACGGCACCTTCGACTTCTACGCCGGCTTCATCATCGGCATCAAGGCGTTCACC
GCGGCGGTGCTCGGCGGCATCGGCTCGCTGCCCGGGGCGATGCTCGGCGGCCTGGTGCTGGGAGTGGCCGAG
GCGCAGTTCTCGGGGATGGTCAACACCGACTACAAGGACGTGTTCGCCTTCTCGTTGCTGGTACTGATCCTG
ATCTTCCGTCCCCAGGGCCTGCTCGGCCGCCCGCAGATCGCCAAGGTGTAA