ViewGene
Locus Name:
GeneID:
Location:

GeneID:2580
TrivialName: PA14_62640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62640
PAO1 Ortholog Locus:PA4734
Sequence Length:882
Protein Length:293
Start: 5589498
Stop: 5590379
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08120.1|AE004887_4 (AE004887) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 292/293 (99%), Positives = 293/293 (100%)
Sequence:
ATGGAAAGCGTCCGTCGCCATATCGAAAGCCAGGTGCTGAGCCTTACCGGGCTCGCCGTCGGCGGTGTCGAC
TTCGAATCGCCGAAAGGCGATCCGGGCCTGTTCGGCCCCGATGCCGCCTGCTGGAAGGTCCACGGCGACTTC
AGCAGCATGATGATCGGCGGCATCGGCGCGCTGCTTCTGCAGATGCTCCATCCGCTGGCCCTGGCGGGGGTG
TGGGACCACTCCAATTTCCGCGACGACCTGCTCGGGCGCCTGCGTCGTACCGGCCAGTTCATCTCGGCCACC
ACCTACGGCCCGCTGGCCGATGCCGAGCGACTGATCGAGCGGGTCCGGCGCATCCACGAAAGCGTCATCGGC
CAGTTGCCCGACGGCACGCCCTACTCCGCCAGCGACCCGGACCTGCTGACCTGGGTGCATGTCGCCGAGGTC
AGCAGCTTTCTCAAGTCCTACCTGCGCTATCTCAATCCCGACCTGCCGGGCAGCGAGCAGGACCGTTACTAC
TCGGAAATCGCCCTGGTCGCCGAACGCCTCGGCGCCCGCGCGGTACCGCGCGACCGCGAGCAGATCGCCGCC
TACCTGGAGGCGATGCGTCCGCGGCTGCGTTGCGACGAACGCACCCGTGAAGTGGTGCGGATTCTCTTCAAC
GCGCCGGCGCCCAGCACCCTGGCCAGGCCGTTCGGCGCGCTGATGCTGCGCGCAGGCGCCGAGCTGTTGCCG
GAATGGGCCGGATCGATGCTCGACCTCCCGTTCAGTCCGCTGCAACGCCGCCTGATCCGCGGCAGCGTCAGG
CGCAGCGTACCCTTGCTGCGCTGGGCGGTGCGCAACGCTTCGATGCATCGAGCCTGCCGGCGCATGGGGCTG
CCGCCGGTGAGTCACTGA
Translation:
MESVRRHIESQVLSLTGLAVGGVDFESPKGDPGLFGPDAACWKVHGDFSSMMIGGIGALLLQMLHPLALAGV
WDHSNFRDDLLGRLRRTGQFISATTYGPLADAERLIERVRRIHESVIGQLPDGTPYSASDPDLLTWVHVAEV
SSFLKSYLRYLNPDLPGSEQDRYYSEIALVAERLGARAVPRDREQIAAYLEAMRPRLRCDERTREVVRILFN
APAPSTLARPFGALMLRAGAELLPEWAGSMLDLPFSPLQRRLIRGSVRRSVPLLRWAVRNASMHRACRRMGL
PPVSH*
AnnotationID:2588GeneID:2580
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 07:07:45
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4734
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5163




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22308




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37616




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2580_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2580
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4284
                           PA4734_tr
                           translation of PA4734
                           293
                           99.65
                           99.99
                           0
                           1516.0
     

     
     
125795
                           gb|AAG08120.1|AE004887_4
                           (AE004887) hypothetical protein PA4734 [Pseudomonas aeruginosa PAO1]
                           293
                           99.65
                           99.99
                           0
                           1516.0
     

     
     
125796
                           gb|AAN70276.1|AE016668_2
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           293
                           65.87
                           79.86
                           4
                           1026.0
     

     
     
125797
                           gb|AAO54492.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           293
                           63.82
                           79.18
                           5
                           1006.0
     

     
     
125798
                           emb|CAD18406.1|
                           (AL646083) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           300
                           54.00
                           64.00
                           9
                           780.0
     

     






      

          
GC ORFID: 45582How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4734Glimmer Score: 

          
Start: 4853178Stop: 4854059

          
Length: 882


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4734 translation of PA4734Homolog Bit Score 588.0

          
Other Homologs:  psyr_15may02_Scaffold15_revised_gene2523 (ORF: BLASTX 406.0), t_PA4734 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAAGCGTCCGTCGCCATATCGAAAGCCAGGTGCTGAGCCTTACCGGGCTCGCCGTCGGCGGTGTCGAC 
TTCGAATCGCCGAAAGGCGATCCGGGCCTGTTCGGCCCCGATGCCGCCTGCTGGAAGGTCCACGGCGACTTC 
AGCAGCATGATGATCGGCGGCATCGGCGCGCTGCTTCTGCAGATGCTCCATCCGCTGGCCCTGGCGGGGGTG 
TGGGACCACTCCAATTTCCGCGACGACCTGCTCGGGCGCCTGCGTCGTACCGGCCAGTTCATCTCGGCCACC 
ACCTACGGCCCGCTGGCCGATGCCGAGCGACTGATCGAGCGGGTCCGGCGCATCCACGAAAGCGTCATCGGC 
CAGTTGCCCGACGGCACGCCCTACTCCGCCAGCGACCCGGACCTGCTGACCTGGGTGCATGTCGCCGAGGTC 
AGCAGCTTTCTCAAGTCCTACCTGCGCTATCTCAATCCCGACCTGCCGGGCAGCGAGCAGGACCGTTACTAC 
TCGGAAATCGCCCTGGTCGCCGAACGCCTCGGCGCCCGCGCGGTACCGCGCGACCGCGAGCAGATCGCCGCC 
TACCTGGAGGCGATGCGTCCGCGGCTGCGTTGCGACGAACGCACCCGTGAAGTGGTGCGGATTCTCTTCAAC 
GCGCCGGCGCCCAGCACCCTGGCCAGGCCGTTCGGCGCGCTGATGCTGCGCGCAGGCGCCGAGCTGTTGCCG 
GAATGGGCCGGATCGATGCTCGACCTCCCGTTCAGTCCGCTGCAACGCCGCCTGATCCGCGGCAGCGTCAGG 
CGCAGCGTACCCTTGCTGCGCTGGGCGGTGCGCAACGCTTCGATGCATCGAGCCTGCCGGCGCATGGGGCTG 
CCGCCGGTGAGTCACTGA