ViewGene
Locus Name:
GeneID:
Location:

GeneID:258
TrivialName: PA14_69230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69230
PAO1 Ortholog Locus:PA5242
Sequence Length:2211
Protein Length:736
Start: 6176809
Stop: 6174599
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08627.1|AE004936_10 (AE004936) polyphosphate kinase [Pseudomonas aeruginosa PAO1]
Identities = 734/736 (99%), Positives = 736/736 (100%)
Sequence:
ATGAATACGCAGCAAGGACTTGATGAGATCGAACGTATCGCCGCCGACGAAACCGTAGTGGCGAACGTGGAA
AGCGAAGCAGAAGTGAAGATGGCCGAAACGATCCCGATGGAAACGCCACCTGCGGTGGTTCCCAGTGTGGAT
GACAGCAGCCTGTACATTCATCGCGAGCTCTCCCAGTTGCAGTTCAACATCCGCGTGCTGGAACAGGCGCTG
GACGAGTCCTACCCGCTCCTGGAGCGGCTGAAGTTCCTCCTCATCTTCTCGAGCAACCTCGACGAATTCTTC
GAGATCCGCATCGCCGGCCTGAAGAAGCAGATCACCTTCGCCCGCGAGCAGGCCGGCGCCGACGGCCTGCTG
CCGCACCAGGCCCTGGCGCGGATCAGCGAGCTGGTCCACGAGCAGGTATCGCGGCAGTACCGGATCCTCAAC
GAGACCCTGTTGCCGGAGCTGGCCAAGCACCAGATCCGCTTCATCCGCCGGCGTCACTGGACGCTGAAGATC
AAGACCTGGGTGCGGCGCTTCTTCCGCGACGAGATCGCGCCGATCATCACCCCGATCGGCCTCGACCCGACC
CACCCGTTCCCGCTGCTGGTGAACAAGAGCCTCAACTTCATCGTCGAGCTGGAGGGGATGGATGCCTTCGGC
CGCGACTCCGGCCTGGCGATCATCCCGGCGCCGCGCCTGCTGCCACGGATCATCAAGCTGCCGGAAGACGTT
GGCGGCGAGGGCGACAACTACGTGTTCCTGTCGTCGATGATCCACGCCCACGCCGACGACCTGTTCCCCGGC
ATGAAGGTGAAGGGCTGCTACCAGTTCCGCCTGACCCGCAACGCCGACCTGTCGGTGGACACCGAGGATGTC
GAGGACCTGGCCCGCGCGCTGCGCGGCGAGCTGTTCTCGCGTCGCTACGGGGACGCGGTACGCCTGGAGGTG
GTGGATACCTGCCCGCAGAACCTGACCAACTACCTGCTCAAGCAATTCGGCCTGTCCGAAAGCGAGTTGTAC
AAGGTCAGCGGCCCGGTCAACCTGACCCGCCTGTTCAGCGTCACCGGCCTGGAAAGCCATCCGGAGCTGCAG
TACCCGCCCTTCACCCCGGCGATCCCGCGTCTTTTGCAGAAGAAGGAAAACCTCTTCAACGTCCTCAGCAAG
CTCGATGTGTTGCTGATGCACCCGTTCGAATCCTTCACCCCGGTGATCGACCTGCTGCGCCAGGCCGCCAAG
GATCCGAACGTGCTGGCGATCAAGCAGACCCTGTACCGCAGCGGTGCCAACTCTGAGATCGTCGACGCCCTG
GTCGAGGCGGCACGCAACGGCAAGGAGGTCACCGCGGTGATCGAGCTGCGCGCCCGCTTCGACGAAGAGTCC
AACCTGCAACTGGCCAGCCGCCTGCAACAGGCCGGCGCGGTAGTGATCTACGGCGTGGTCGGCTTCAAGACC
CACGCCAAGATGATGCTGATCCTCCGTCGCGAGGACGGCGAACTGCGCCGCTACGCGCACCTGGGCACCGGC
AACTACCATGCCGGCAACGCTCGCCTGTACACCGACTACAGCCTGCTGACCGCCGACGTGGCGCTCTGCGAG
GACCTGCACAAGCTGTTCAACCAGCTGATCGGGATGGGCAAGACGCTGCGCATGAAGAAGCTGTTGCATGCG
CCGTTCACCCTGAAGAAGAACCTGCTGGAAATGATCAACCGCGAGGCGGCCCAGGCGGCGCTCGGCCAGCCG
GCGCACATCATGGCCAAGGTCAACTCGCTGACCGATCCGAAGGTCATCCGCGCCCTGTACAAGGCCAGCCAG
GCCGGGGTCAGGATCGACCTGGTGGTGCGTGGCATGTGCTGCCTGCGGCCAGGCATCCCGGGGGTCTCGCAC
AATATCCACGTGCGCTCGATCATCGGACGCTTCCTCGAGCACAGCCGCATCTACTACTTCCTCAACGGCGGC
GACGAGAAGCTCTATCTCTCCAGCGCCGACTGGATGGAGCGCAACCTCGACATGCGCGTCGAGACCTGCTTC
CCGGTGGAAGGCAAGAAGCTGGTGCAGCGGGTCAAGAAGGAACTGGAAACGTATCTGACCGACAACACCCAG
GCCTGGGTGTTGCAGGCCGACGGTAGCTACCAGCGGCTCAGTCCCACCGGTAACCAGAACCCCCGCAATACC
CAGGCGACCCTGCTGGAGAAGCTGGCCGCGCCGGTGCTTACCGCACGTTGA
Translation:
MNTQQGLDEIERIAADETVVANVESEAEVKMAETIPMETPPAVVPSVDDSSLYIHRELSQLQFNIRVLEQAL
DESYPLLERLKFLLIFSSNLDEFFEIRIAGLKKQITFAREQAGADGLLPHQALARISELVHEQVSRQYRILN
ETLLPELAKHQIRFIRRRHWTLKIKTWVRRFFRDEIAPIITPIGLDPTHPFPLLVNKSLNFIVELEGMDAFG
RDSGLAIIPAPRLLPRIIKLPEDVGGEGDNYVFLSSMIHAHADDLFPGMKVKGCYQFRLTRNADLSVDTEDV
EDLARALRGELFSRRYGDAVRLEVVDTCPQNLTNYLLKQFGLSESELYKVSGPVNLTRLFSVTGLESHPELQ
YPPFTPAIPRLLQKKENLFNVLSKLDVLLMHPFESFTPVIDLLRQAAKDPNVLAIKQTLYRSGANSEIVDAL
VEAARNGKEVTAVIELRARFDEESNLQLASRLQQAGAVVIYGVVGFKTHAKMMLILRREDGELRRYAHLGTG
NYHAGNARLYTDYSLLTADVALCEDLHKLFNQLIGMGKTLRMKKLLHAPFTLKKNLLEMINREAAQAALGQP
AHIMAKVNSLTDPKVIRALYKASQAGVRIDLVVRGMCCLRPGIPGVSHNIHVRSIIGRFLEHSRIYYFLNGG
DEKLYLSSADWMERNLDMRVETCFPVEGKKLVQRVKKELETYLTDNTQAWVLQADGSYQRLSPTGNQNPRNT
QATLLEKLAAPVLTAR*
AnnotationID:268GeneID:258
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 14:02:21
Gene Name:ppk
Confidence Code:1
GeneProduct:polyphosphate kinase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02503
Secondary Functional Category(ies):
EC Number:2.7.4.1
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58676.1| (AE016875) polyphosphate kinase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 736

 Score = 1205 bits (3118), Expect = 0.0
 Identities = 603/737 (81%), Positives = 669/737 (90%), Gaps = 2/737 (0%)

>gb|AAN70782.1|AE016722_3 (AE016793) polyphosphate kinase [Pseudomonas putida KT2440]
          Length = 727

 Score = 1190 bits (3079), Expect = 0.0
 Identities = 591/717 (82%), Positives = 655/717 (91%)

>emb|CAA86935.1| (Z46863) polyphosphate kinase [Acinetobacter sp. ADP1]
          Length = 691

 Score =  842 bits (2175), Expect = 0.0
 Identities = 412/694 (59%), Positives = 529/694 (76%), Gaps = 8/694 (1%)








 
Structural Features:
pfam02503, PP_kinase, Polyphosphate kinase.
CD-Length = 676 residues, 100.0% aligned
Score = 1006 bits (2602), Expect = 0.0
Identities = 379/682 (55%), Positives = 484/682 (70%), Gaps = 6/682 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:519




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17661




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34867




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:258_cdd.html


    		




 
URL:

















    ReferenceID:35745




  
Author/Investigator(s):
        Ishige K, Kameda A, Noguchi T, Shiba T.





  
Title:
        The polyphosphate kinase gene of Pseudomonas aeruginosa.




  
PubMed:
        9734809


MedLine:
        




    
Source:
DNA Res. 1998 Jun 30;5(3):157-62.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9734809









           
Homologs By Global Alignment 

           

       



     
Gene ID:258
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
434
                           PA5242_tr
                           translation of PA5242
                           736
                           99.72
                           99.99
                           0
                           3741.0
     

     
     
23546
                           gb|AAG08627.1|AE004936_10
                           (AE004936) polyphosphate kinase [Pseudomonas aeruginosa PAO1]
                           736
                           99.72
                           99.99
                           0
                           3741.0
     

     
     
23547
                           dbj|BAA22565.1|
                           (AB007598) polyphosphate kinase [Pseudomonas aeruginosa]
                           736
                           99.72
                           99.99
                           0
                           3741.0
     

     
     
23548
                           gb|AAD29112.1|AF087931_1
                           (AF087931) polyphosphate kinase [Pseudomonas aeruginosa]
                           736
                           93.47
                           93.75
                           46
                           3517.0
     

     
     
23549
                           gb|AAO58676.1|
                           (AE016875) polyphosphate kinase [Pseudomonas syringae pv. tomato str. DC3000]
                           737
                           81.81
                           90.77
                           2
                           3122.0
     

     






      

          
GC ORFID: 43260How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5242Glimmer Score: 

          
Start: 5440496Stop: 5438286

          
Length: 2211


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5242 translation of PA5242Homolog Bit Score 1445.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3206 (ORF: BLASTX 1209.0), t_PA5242 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATACGCAGCAAGGACTTGATGAGATCGAACGTATCGCCGCCGACGAAACCGTAGTGGCGAACGTGGAA 
AGCGAAGCAGAAGTGAAGATGGCCGAAACGATCCCGATGGAAACGCCACCTGCGGTGGTTCCCAGTGTGGAT 
GACAGCAGCCTGTACATTCATCGCGAGCTCTCCCAGTTGCAGTTCAACATCCGCGTGCTGGAACAGGCGCTG 
GACGAGTCCTACCCGCTCCTGGAGCGGCTGAAGTTCCTCCTCATCTTCTCGAGCAACCTCGACGAATTCTTC 
GAGATCCGCATCGCCGGCCTGAAGAAGCAGATCACCTTCGCCCGCGAGCAGGCCGGCGCCGACGGCCTGCTG 
CCGCACCAGGCCCTGGCGCGGATCAGCGAGCTGGTCCACGAGCAGGTATCGCGGCAGTACCGGATCCTCAAC 
GAGACCCTGTTGCCGGAGCTGGCCAAGCACCAGATCCGCTTCATCCGCCGGCGTCACTGGACGCTGAAGATC 
AAGACCTGGGTGCGGCGCTTCTTCCGCGACGAGATCGCGCCGATCATCACCCCGATCGGCCTCGACCCGACC 
CACCCGTTCCCGCTGCTGGTGAACAAGAGCCTCAACTTCATCGTCGAGCTGGAGGGGATGGATGCCTTCGGC 
CGCGACTCCGGCCTGGCGATCATCCCGGCGCCGCGCCTGCTGCCACGGATCATCAAGCTGCCGGAAGACGTT 
GGCGGCGAGGGCGACAACTACGTGTTCCTGTCGTCGATGATCCACGCCCACGCCGACGACCTGTTCCCCGGC 
ATGAAGGTGAAGGGCTGCTACCAGTTCCGCCTGACCCGCAACGCCGACCTGTCGGTGGACACCGAGGATGTC 
GAGGACCTGGCCCGCGCGCTGCGCGGCGAGCTGTTCTCGCGTCGCTACGGGGACGCGGTACGCCTGGAGGTG 
GTGGATACCTGCCCGCAGAACCTGACCAACTACCTGCTCAAGCAATTCGGCCTGTCCGAAAGCGAGTTGTAC 
AAGGTCAGCGGCCCGGTCAACCTGACCCGCCTGTTCAGCGTCACCGGCCTGGAAAGCCATCCGGAGCTGCAG 
TACCCGCCCTTCACCCCGGCGATCCCGCGTCTTTTGCAGAAGAAGGAAAACCTCTTCAACGTCCTCAGCAAG 
CTCGATGTGTTGCTGATGCACCCGTTCGAATCCTTCACCCCGGTGATCGACCTGCTGCGCCAGGCCGCCAAG 
GATCCGAACGTGCTGGCGATCAAGCAGACCCTGTACCGCAGCGGTGCCAACTCTGAGATCGTCGACGCCCTG 
GTCGAGGCGGCACGCAACGGCAAGGAGGTCACCGCGGTGATCGAGCTGCGCGCCCGCTTCGACGAAGAGTCC 
AACCTGCAACTGGCCAGCCGCCTGCAACAGGCCGGCGCGGTAGTGATCTACGGCGTGGTCGGCTTCAAGACC 
CACGCCAAGATGATGCTGATCCTCCGTCGCGAGGACGGCGAACTGCGCCGCTACGCGCACCTGGGCACCGGC 
AACTACCATGCCGGCAACGCTCGCCTGTACACCGACTACAGCCTGCTGACCGCCGACGTGGCGCTCTGCGAG 
GACCTGCACAAGCTGTTCAACCAGCTGATCGGGATGGGCAAGACGCTGCGCATGAAGAAGCTGTTGCATGCG 
CCGTTCACCCTGAAGAAGAACCTGCTGGAAATGATCAACCGCGAGGCGGCCCAGGCGGCGCTCGGCCAGCCG 
GCGCACATCATGGCCAAGGTCAACTCGCTGACCGATCCGAAGGTCATCCGCGCCCTGTACAAGGCCAGCCAG 
GCCGGGGTCAGGATCGACCTGGTGGTGCGTGGCATGTGCTGCCTGCGGCCAGGCATCCCGGGGGTCTCGCAC 
AATATCCACGTGCGCTCGATCATCGGACGCTTCCTCGAGCACAGCCGCATCTACTACTTCCTCAACGGCGGC 
GACGAGAAGCTCTATCTCTCCAGCGCCGACTGGATGGAGCGCAACCTCGACATGCGCGTCGAGACCTGCTTC 
CCGGTGGAAGGCAAGAAGCTGGTGCAGCGGGTCAAGAAGGAACTGGAAACGTATCTGACCGACAACACCCAG 
GCCTGGGTGTTGCAGGCCGACGGTAGCTACCAGCGGCTCAGTCCCACCGGTAACCAGAACCCCCGCAATACC 
CAGGCGACCCTGCTGGAGAAGCTGGCCGCGCCGGTGCTTACCGCACGTTGA