ViewGene
Locus Name:
GeneID:
Location:

GeneID:2577
TrivialName: PA14_27560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27560
PAO1 Ortholog Locus:PA2823
Sequence Length:891
Protein Length:296
Start: 2392375
Stop: 2393265
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06211.1|AE004709_4 (AE004709) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 292/295 (98%), Positives = 293/295 (99%)
Sequence:
GTGGATTCCCGATTGAGCGATTTTCTTGCCCGCGCCGAAAGCGTGCTCGCGCGCCTGGAGCCGCTGCTGCCG
GCCGTACGCGAAGCCGTCGACTGGGAGCGCAGCCTGGCGGCGCGCTGGCACCGCGACGGCCGCAGTGGCTAC
CTGCAGCCGCTGGAGGTCAGCCTCGACCTGCGCCTGGCCGACCTGCTGGGCGTAGAGCGGCAGTGCGAGCAA
CTGGAACGCAACACCCGCCAGTTCGTCGCCGGCCAGCCGGCCAACCACGCGTTGCTCTGGGGGGCCCGCGGG
ACCGGCAAGTCCTCTCTGGTTCGTGCGCTGCTGGCCGAGCTGGCCGGCGCCGGGCTGCGCCTGATCGAGATC
GAGCGCGACCACCTGGCCGACCTGCCGCGCGTGGTCGAGCAACTGCAAGGCCTGCCGCAGCGCTTCGTGCTG
TTCTGCGACGACCTCTCGTTCGATGCCGGGGAAGGCGACTACCGGGTACTCAAGAGCGTGCTCGACGGCTCG
CTGGAGCAGGCGCCGGACAATGTGCTGCTCTACGCCACCTCCAACCGCCGGCACCTGGTTTCGGAGAAGCAG
AGCGACAACGAGAACTGGAAGATGGTGGACGGCGAGCTGCATCCCAACGAAGCGGTGGAGGACAAGATCGCC
TTGTCCGACCGTTTCGGCCTGTGGCTGTCGTTCTATCCCTTCACCCAGGAGCATTTCCTCAGCGTGGTTCGC
CACTGGGTGGACGTGCTCGCGGAGAAGGCCGGGCTGGCCTGGAGCTGGAGCGAGGAGCTGGAGAAGGAAGCG
ATCCGCTGGGCGCTTGGCCGCGGCAACCGCAACGGCCGTTGCGCCTATCAGTTCTCCCGCTACTGGGTGGGC
AAGCAACTGCTGGAGCGCCAGGTATGA
Translation:
MDSRLSDFLARAESVLARLEPLLPAVREAVDWERSLAARWHRDGRSGYLQPLEVSLDLRLADLLGVERQCEQ
LERNTRQFVAGQPANHALLWGARGTGKSSLVRALLAELAGAGLRLIEIERDHLADLPRVVEQLQGLPQRFVL
FCDDLSFDAGEGDYRVLKSVLDGSLEQAPDNVLLYATSNRRHLVSEKQSDNENWKMVDGELHPNEAVEDKIA
LSDRFGLWLSFYPFTQEHFLSVVRHWVDVLAEKAGLAWSWSEELEKEAIRWALGRGNRNGRCAYQFSRYWVG
KQLLERQV*
AnnotationID:2585GeneID:2577
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 13:01:56
Gene Name:
Confidence Code:3
GeneProduct:putative ATPase
Cell Localization:()
Synonyms:PA2823
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2607
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2607, Predicted ATPase (AAA+ superfamily)
CD-Length = 287 residues,  99.3% aligned
Score =  376 bits (966), Expect = 2e-105
Identities = 155/295 (52%), Positives = 196/295 (66%), Gaps = 10/295 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14631




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22302




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36192




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2577_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2577
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4280
                           PA2823_tr
                           translation of PA2823
                           296
                           98.64
                           98.98
                           0
                           1515.0
     

     
     
125684
                           gb|AAG06211.1|AE004709_4
                           (AE004709) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           296
                           98.31
                           98.98
                           0
                           1512.0
     

     
     
125686
                           gb|AAO55303.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           296
                           79.39
                           87.50
                           0
                           1237.0
     

     
     
125685
                           gb|AAN67495.1|AE016376_5
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           349
                           67.62
                           75.07
                           54
                           1246.0
     

     
     
125688
                           gb|AAQ61274.1|
                           (AE016922) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           304
                           51.64
                           66.11
                           41
                           763.0
     

     






      

          
GC ORFID: 45579How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2823Glimmer Score: 

          
Start: 2561552Stop: 2560662

          
Length: 891


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2823 translation of PA2823Homolog Bit Score 588.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7763 (ORF: BLASTX 481.0), t_PA2823 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGATTCCCGATTGAGCGATTTTCTTGCCCGCGCCGAAAGCGTGCTCGCGCGCCTGGAGCCGCTGCTGCCG 
GCCGTACGCGAAGCCGTCGACTGGGAGCGCAGCCTGGCGGCGCGCTGGCACCGCGACGGCCGCAGTGGCTAC 
CTGCAGCCGCTGGAGGTCAGCCTCGACCTGCGCCTGGCCGACCTGCTGGGCGTAGAGCGGCAGTGCGAGCAA 
CTGGAACGCAACACCCGCCAGTTCGTCGCCGGCCAGCCGGCCAACCACGCGTTGCTCTGGGGGGCCCGCGGG 
ACCGGCAAGTCCTCTCTGGTTCGTGCGCTGCTGGCCGAGCTGGCCGGCGCCGGGCTGCGCCTGATCGAGATC 
GAGCGCGACCACCTGGCCGACCTGCCGCGCGTGGTCGAGCAACTGCAAGGCCTGCCGCAGCGCTTCGTGCTG 
TTCTGCGACGACCTCTCGTTCGATGCCGGGGAAGGCGACTACCGGGTACTCAAGAGCGTGCTCGACGGCTCG 
CTGGAGCAGGCGCCGGACAATGTGCTGCTCTACGCCACCTCCAACCGCCGGCACCTGGTTTCGGAGAAGCAG 
AGCGACAACGAGAACTGGAAGATGGTGGACGGCGAGCTGCATCCCAACGAAGCGGTGGAGGACAAGATCGCC 
TTGTCCGACCGTTTCGGCCTGTGGCTGTCGTTCTATCCCTTCACCCAGGAGCATTTCCTCAGCGTGGTTCGC 
CACTGGGTGGACGTGCTCGCGGAGAAGGCCGGGCTGGCCTGGAGCTGGAGCGAGGAGCTGGAGAAGGAAGCG 
ATCCGCTGGGCGCTTGGCCGCGGCAACCGCAACGGCCGTTGCGCCTATCAGTTCTCCCGCTACTGGGTGGGC 
AAGCAACTGCTGGAGCGCCAGGTATGA