ViewGene
Locus Name:
GeneID:
Location:

GeneID:2576
TrivialName: PA14_37660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37660
PAO1 Ortholog Locus:PA2076
Sequence Length:903
Protein Length:300
Start: 3353906
Stop: 3353004
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05464.1|AE004635_2 (AE004635) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 300/300 (100%), Positives = 300/300 (100%)
Sequence:
ATGCCTTCGCTGCGCCAGCTGATGTATTTCGCCTGTGTCGCCGAGTACGGCAGCATCGGCCAGGCCGCCGAG
GTGCTGCACGTTTCGCAGCCGTCGCTGTCGCGGCAGATCCAGGCGCTCGAAGTGCACATCGGCGAGGCGCTG
TTCGTCCGCGGTCCGGCCGGGGTGAGCCTGACCGAGGTGGGCAGGGTGGTGCATTGCCGCGCGGTGAAGATC
ATCGCCGAGGCCAAGGCGCTGACCCGCGACATCGGCGACGGCGACGACCGCCAGTTGCACATCGGTTTCAGC
CGCTACCTCGATCCCGGCTGGTCCGGCGAGCTGGCCCGGCAGTTGAAGGAAGCGCGGGTGTGCAGCGCCGTT
TCGCCATCCTGGGCGCCATCGCTGGACCTGCTCAGCCTGGTCCGCGAGTCGTCCCTGGACGCGGCGATCATC
GGCGCGCCGCCGAAGGTGGTGCGCGAATACGAGCTGATGGAGATCGGCAGCTACGAGCACGTCATCGCCCTG
TCGGAAACCCTGCACCGGCGACTGGCGCCCGACTGGTCGCTGAACGACCTGATTGGCGAGCCGCTGCTGGTA
CCGAAGGACTCGCTGTTTCCCGCCTACAGCCAGTTCATGAACGATGCGATGGATGCCGCTGCCTTCGCGCCC
CGGCGCAGCGTGCGGCCGAACGACCTGAGCATTCTCCTGGCCCAGGTCGCCAGCGGCGACGGCTTCGCCTTC
CTGCCGTTGTCGCTGACCAAGTTCGCCTATCCGGGGGTGGCCTTCACCGCTCTGCCGGCGGCGGTCAACGAA
GGCTTCCGCCTGCCGGTGGGGCTGGCGGTGTCGCCGACTTCGCGGCTTCGTGCCAGCGACACCCAGTTCGAA
TGCTTCGTCGAGACCGCGCGGCGGGTCGCCGCCGGTTGA
Translation:
MPSLRQLMYFACVAEYGSIGQAAEVLHVSQPSLSRQIQALEVHIGEALFVRGPAGVSLTEVGRVVHCRAVKI
IAEAKALTRDIGDGDDRQLHIGFSRYLDPGWSGELARQLKEARVCSAVSPSWAPSLDLLSLVRESSLDAAII
GAPPKVVREYELMEIGSYEHVIALSETLHRRLAPDWSLNDLIGEPLLVPKDSLFPAYSQFMNDAMDAAAFAP
RRSVRPNDLSILLAQVASGDGFAFLPLSLTKFAYPGVAFTALPAAVNEGFRLPVGLAVSPTSRLRASDTQFE
CFVETARRVAAG*
AnnotationID:2584GeneID:2576
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 06:06:26
Gene Name:
Confidence Code:3
GeneProduct:LysR-type transcriptional regulator
Cell Localization:()
Synonyms:PA2076
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.7% aligned
Score =  103 bits (257), Expect = 2e-23
Identities = 87/303 (28%), Positives = 122/303 (40%), Gaps = 12/303 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5155




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22300




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32622




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2576_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2576
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4279
                           PA2076_tr
                           translation of PA2076
                           300
                           99.99
                           99.99
                           0
                           1516.0
     

     
     
125683
                           gb|AAG05464.1|AE004635_2
                           (AE004635) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           300
                           99.99
                           99.99
                           0
                           1516.0
     

     






      

          
GC ORFID: 45578How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2076Glimmer Score: 

          
Start: 1600008Stop: 1600910

          
Length: 903


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2076 translation of PA2076Homolog Bit Score 588.0

          
Other Homologs:  t_PA2076 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTTCGCTGCGCCAGCTGATGTATTTCGCCTGTGTCGCCGAGTACGGCAGCATCGGCCAGGCCGCCGAG 
GTGCTGCACGTTTCGCAGCCGTCGCTGTCGCGGCAGATCCAGGCGCTCGAAGTGCACATCGGCGAGGCGCTG 
TTCGTCCGCGGTCCGGCCGGGGTGAGCCTGACCGAGGTGGGCAGGGTGGTGCATTGCCGCGCGGTGAAGATC 
ATCGCCGAGGCCAAGGCGCTGACCCGCGACATCGGCGACGGCGACGACCGCCAGTTGCACATCGGTTTCAGC 
CGCTACCTCGATCCCGGCTGGTCCGGCGAGCTGGCCCGGCAGTTGAAGGAAGCGCGGGTGTGCAGCGCCGTT 
TCGCCATCCTGGGCGCCATCGCTGGACCTGCTCAGCCTGGTCCGCGAGTCGTCCCTGGACGCGGCGATCATC 
GGCGCGCCGCCGAAGGTGGTGCGCGAATACGAGCTGATGGAGATCGGCAGCTACGAGCACGTCATCGCCCTG 
TCGGAAACCCTGCACCGGCGACTGGCGCCCGACTGGTCGCTGAACGACCTGATTGGCGAGCCGCTGCTGGTA 
CCGAAGGACTCGCTGTTTCCCGCCTACAGCCAGTTCATGAACGATGCGATGGATGCCGCTGCCTTCGCGCCC 
CGGCGCAGCGTGCGGCCGAACGACCTGAGCATTCTCCTGGCCCAGGTCGCCAGCGGCGACGGCTTCGCCTTC 
CTGCCGTTGTCGCTGACCAAGTTCGCCTATCCGGGGGTGGCCTTCACCGCTCTGCCGGCGGCGGTCAACGAA 
GGCTTCCGCCTGCCGGTGGGGCTGGCGGTGTCGCCGACTTCGCGGCTTCGTGCCAGCGACACCCAGTTCGAA 
TGCTTCGTCGAGACCGCGCGGCGGGTCGCCGCCGGTTGA