ViewGene
Locus Name:
GeneID:
Location:

GeneID:2573
TrivialName: PA14_47150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47150
PAO1 Ortholog Locus:PA1321
Sequence Length:891
Protein Length:296
Start: 4202596
Stop: 4201706
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04710.1|AE004561_6 (AE004561) cytochrome o ubiquinol oxidase protein CyoE [Pseudomonas aeruginosa PAO1]
Identities = 296/296 (100%), Positives = 296/296 (100%)
Sequence:
GTGAAGCTGAAACGCTATCTCCTGGTGGCCAAGCCGGGAATCATCTTCGGCAACCTGATCGCGGTGGCGGGG
GGATACTTCCTCGCCGCCCGCGGCAGCGTCGAGCCGATGCTGTTGCTGGCCACGGTCATCGGCCTGTCGCTG
GTGGTCGCCAGTGGGTGCGTGCTGAACAACTGCATCGACCGCGACATCGACCGGCACATGGAGCGGACCCGC
GGGCGGGTCACCGTGACCGGGCAGATCTCGCTGAAGGCTGCCCTGGCCCACGGCCTGGTCCTCGGGGTCGCC
GGCTTCGGCCTGCTGTGGTGGCGGACCAACCCGCTGACCACCGCGCTGGCCGGCTTCGGCTACTTCGTCTAC
GTCGGCCTGTACAGCCTGTGGTTCAAGCGTCGTTCGCAGTACGGCACGCTGGTCGGCAGCCTCTCCGGGGCG
ATGCCGCCGGTGGTCGGCTACTGCGCGGTGAGCGGCCAGTTCGACGCCGGAGCTGCCTCGCTGCTGGCGATC
TTCTGCCTGTGGCAGATGCCGCACTCCTATGCCATCGCCATCTTCCGGCTGAAGGACTACGAGGCGGCCGGC
ATCCCGGTGCTGCCGGTGGCGCGCGGCATCGCGGTGACCAAGATCCACATCGTGCTCTACATCCTCGCTTTC
ATGGCGGCGACCCTCGCCTTGTGCCTGGGCGGCTACGCCGGCTACGGCTACCTGCTGGTGGCGGTGGCGGTG
AGCCTGTGGTGGCTGGCCATCGCCCTGACCGGCTACTGGACCGCCGACGACCGGGTCTGGGCGCGCAAGCTG
TTCGCCTTCTCCATCGTCGCCATCACCGCGCTGAGCGTGATGATGTCCATCGACTTCCAGGTGGCGCCCGCC
ACTCATCTGGTCGCCTCGCTGTTCTGA
Translation:
MKLKRYLLVAKPGIIFGNLIAVAGGYFLAARGSVEPMLLLATVIGLSLVVASGCVLNNCIDRDIDRHMERTR
GRVTVTGQISLKAALAHGLVLGVAGFGLLWWRTNPLTTALAGFGYFVYVGLYSLWFKRRSQYGTLVGSLSGA
MPPVVGYCAVSGQFDAGAASLLAIFCLWQMPHSYAIAIFRLKDYEAAGIPVLPVARGIAVTKIHIVLYILAF
MAATLALCLGGYAGYGYLLVAVAVSLWWLAIALTGYWTADDRVWARKLFAFSIVAITALSVMMSIDFQVAPA
THLVASLF*
AnnotationID:2581GeneID:2573
AnnotatorUID: diggins
Modification Date/Time: 2005-04-27 09:09:33
Gene Name:cyoE
Confidence Code:2
GeneProduct:cytochrome o ubiquinol oxidase protein CyoE
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:farnesyl-diphosphate farnesyltransferase
Functional Category Confidence Code:5
COGs:COG0109
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:2.5.1.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN79017.1|AE016756_200 (AE016756) Protoheme IX farnesyltransferase [Escherichia coli
           CFT073]
          Length = 296

 Score =  395 bits (1014), Expect = e-109
 Identities = 195/296 (65%), Positives = 235/296 (79%)

>gb|AAN42027.1|AE015069_10 (AE015069) cytochrome o ubiquinol oxidase C subunit [Shigella
           flexneri 2a str. 301]
          Length = 311

 Score =  392 bits (1006), Expect = e-108
 Identities = 194/296 (65%), Positives = 234/296 (79%)

>gb|AAO70011.1| (AE016842) cytochrome o ubiquinol oxidase C subunit [Salmonella
           enterica subsp. enterica serovar Typhi Ty2]
          Length = 296

 Score =  389 bits (998), Expect = e-107
 Identities = 192/292 (65%), Positives = 230/292 (78%)






 
Structural Features:
COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 304 residues,  95.1% aligned
Score =  294 bits (753), Expect = 1e-80
Identities = 138/290 (47%), Positives = 175/290 (60%), Gaps = 1/290 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14627




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22294




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37455




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2573_cdd.html


    		




 
URL:

















    ReferenceID:38013




  
Author/Investigator(s):
        Chepuri V, Lemieux L, Au DC, Gennis RB.





  
Title:
        The sequence of the cyo operon indicates substantial structural similarities between the cytochrome o ubiquinol oxidase of Escherichia coli and the aa3-type family of cytochrome c oxidases.




  
PubMed:
        2162835


MedLine:
        




    
Source:
J Biol Chem. 1990 Jul 5;265(19):11185-92.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2162835









           
Homologs By Global Alignment 

           

       



     
Gene ID:2573
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4274
                           PA1321_tr
                           translation of PA1321
                           296
                           99.99
                           99.99
                           0
                           1515.0
     

     
     
125646
                           gb|AAG04710.1|AE004561_6
                           (AE004561) cytochrome o ubiquinol oxidase protein CyoE [Pseudomonas aeruginosa PAO1]
                           296
                           99.66
                           99.99
                           0
                           1512.0
     

     
     
125647
                           gb|AAQ61654.1|
                           (AE016924) farnesyl-diphosphate farnesyltransferase [Chromobacterium violaceum ATCC 12472]
                           302
                           66.88
                           78.14
                           6
                           1031.0
     

     
     
125653
                           gb|AAA23635.1|
                           (J05492) cytochrome o ubiquinol oxidase C subunit [Escherichia coli]
                           296
                           65.54
                           79.39
                           0
                           1010.0
     

     
     
125652
                           dbj|BAB33905.1|
                           (AP002551) protoheme IX farnesyltransferase [Escherichia coli O157:H7]
                           296
                           65.54
                           79.39
                           0
                           1010.0
     

     






      

          
GC ORFID: 45575How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1321Glimmer Score: 

          
Start: 751313Stop: 752203

          
Length: 891


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1321 translation of PA1321Homolog Bit Score 588.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4444 (ORF: BLASTX 374.0), t_PA1321 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAGCTGAAACGCTATCTCCTGGTGGCCAAGCCGGGAATCATCTTCGGCAACCTGATCGCGGTGGCGGGG 
GGATACTTCCTCGCCGCCCGCGGCAGCGTCGAGCCGATGCTGTTGCTGGCCACGGTCATCGGCCTGTCGCTG 
GTGGTCGCCAGTGGGTGCGTGCTGAACAACTGCATCGACCGCGACATCGACCGGCACATGGAGCGGACCCGC 
GGGCGGGTCACCGTGACCGGGCAGATCTCGCTGAAGGCTGCCCTGGCCCACGGCCTGGTCCTCGGGGTCGCC 
GGCTTCGGCCTGCTGTGGTGGCGGACCAACCCGCTGACCACCGCGCTGGCCGGCTTCGGCTACTTCGTCTAC 
GTCGGCCTGTACAGCCTGTGGTTCAAGCGTCGTTCGCAGTACGGCACGCTGGTCGGCAGCCTCTCCGGGGCG 
ATGCCGCCGGTGGTCGGCTACTGCGCGGTGAGCGGCCAGTTCGACGCCGGAGCTGCCTCGCTGCTGGCGATC 
TTCTGCCTGTGGCAGATGCCGCACTCCTATGCCATCGCCATCTTCCGGCTGAAGGACTACGAGGCGGCCGGC 
ATCCCGGTGCTGCCGGTGGCGCGCGGCATCGCGGTGACCAAGATCCACATCGTGCTCTACATCCTCGCTTTC 
ATGGCGGCGACCCTCGCCTTGTGCCTGGGCGGCTACGCCGGCTACGGCTACCTGCTGGTGGCGGTGGCGGTG 
AGCCTGTGGTGGCTGGCCATCGCCCTGACCGGCTACTGGACCGCCGACGACCGGGTCTGGGCGCGCAAGCTG 
TTCGCCTTCTCCATCGTCGCCATCACCGCGCTGAGCGTGATGATGTCCATCGACTTCCAGGTGGCGCCCGCC 
ACTCATCTGGTCGCCTCGCTGTTCTGA