ViewGene
Locus Name:
GeneID:
Location:

GeneID:2572
TrivialName: PA14_47080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47080
PAO1 Ortholog Locus:PA1328
Sequence Length:909
Protein Length:302
Start: 4193092
Stop: 4194000
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04717.1|AE004562_4 (AE004562) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 300/302 (99%), Positives = 301/302 (99%)
Sequence:
ATGAATCGACGCGATCCCCTCGCCGGCCTGCATGTCTTCAGGCAGGTCGCCGACACCGGCAGCTTCACCCGC
GCCGCCGCCCTGCTCGGGGTGACGCCGGCGGCGGTGAGCCAGGCGATCAACCAACTGGAAGCCGAGCTGCGT
CTCAAGCTGTTCCACCGCACCACCCGCGGGGTCAGCCTGAGCGAGGCCGGGCAGCGCTACCACGAACAGACC
GAACAGCCCTACCGCGACCTGGTGCGCGCCCGCGAAGCGCTCGGCGAAAGCCTCGCGGAACCCTCCGGGCAG
TTGCGCATCAGCGCCCTGCACCTGGCGAAGAACCTGGTGATCGCACCGATGCTCAACGAGTTCGTGCGACGC
TACCCGAAGGTGCAACTGGAGATCCGCTACGAGGACCAGTTGGTGGATATCGTCAGGGAACGGCTGGATGCC
GGCATCCGCCTGGCCGACGCCCTGCAGCCGGGCATGGTCGGGGTGCAACTGACAGCGCCGCTCGCGTGCCTG
CTGGTGGCCACTCCGGCCTACCTCGCCGAGCACGGTACGCCGGCCAGCGTCGCCGACCTCGATGGGCATGCC
GCCGTGCGCTTCCGTTTCCCGCGCAGCGGCCGCCTGCACAAGTGGCGCTTGCGGGAAGACGGGCGGGAACTG
GAAGTGGACCTGCCGGCACGCTTCGTCAGCACCGACACCGAGACGATCATCGAGGCGGCCCGCGCCGGCGCC
GGGATCGCCCAGGCATTCATCCGCGAGCGGGTCGCCGCGGACCTCGCCGCCGGGCGCCTGGTGGAAGTGCTG
CCTGGCAGTTGCCTGCCGCTGCCGCCGATGTGGCTGTATTACCTGAACCGCCGCCACGTACCGGCCAAGCTG
CGCGCCTTCATCGAACTGCTACGCGAGTGGCGGCAGCCGGCCTGA
Translation:
MNRRDPLAGLHVFRQVADTGSFTRAAALLGVTPAAVSQAINQLEAELRLKLFHRTTRGVSLSEAGQRYHEQT
EQPYRDLVRAREALGESLAEPSGQLRISALHLAKNLVIAPMLNEFVRRYPKVQLEIRYEDQLVDIVRERLDA
GIRLADALQPGMVGVQLTAPLACLLVATPAYLAEHGTPASVADLDGHAAVRFRFPRSGRLHKWRLREDGREL
EVDLPARFVSTDTETIIEAARAGAGIAQAFIRERVAADLAAGRLVEVLPGSCLPLPPMWLYYLNRRHVPAKL
RAFIELLREWRQPA*
AnnotationID:2580GeneID:2572
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 07:07:19
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1328
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam00126
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC41727.1| (AL591783) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinorhizobium
           meliloti]
          Length = 296

 Score =  199 bits (505), Expect = 2e-50
 Identities = 118/293 (40%), Positives = 164/293 (55%), Gaps = 2/293 (0%)

>gb|AAL41283.1| (AE008998) transcriptional regulator, LysR family [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 296

 Score =  199 bits (505), Expect = 2e-50
 Identities = 117/293 (39%), Positives = 164/293 (55%), Gaps = 2/293 (0%)






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  99.0% aligned
Score =  128 bits (321), Expect = 9e-31
Identities = 101/303 (33%), Positives = 145/303 (47%), Gaps = 14/303 (4%)

pfam00126, HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family.
CD-Length = 60 residues,  95.0% aligned
Score = 66.3 bits (162), Expect = 4e-12
Identities = 31/57 (54%), Positives = 40/57 (70%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5147




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22292




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37449




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2572_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2572
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4272
                           PA1328_tr
                           translation of PA1328
                           302
                           99.33
                           99.66
                           0
                           1516.0
     

     
     
125642
                           gb|AAG04717.1|AE004562_4
                           (AE004562) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           302
                           99.33
                           99.66
                           0
                           1516.0
     

     
     
4273
                           PA1738_tr
                           translation of PA1738
                           306
                           41.50
                           54.57
                           6
                           518.0
     

     
     
125644
                           gb|AAG05127.1|AE004600_3
                           (AE004600) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           306
                           41.50
                           54.57
                           6
                           518.0
     

     
     
125643
                           dbj|BAB48199.1|
                           (AP002995) transcriptional regulator [Mesorhizobium loti]
                           314
                           40.44
                           56.36
                           15
                           541.0
     

     






      

          
GC ORFID: 45574How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1328Glimmer Score: 

          
Start: 760817Stop: 759909

          
Length: 909


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1328 translation of PA1328Homolog Bit Score 588.0

          
Other Homologs:  t_PA1738 (ORF: BLASTX 204.0), t_PA1328 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCGACGCGATCCCCTCGCCGGCCTGCATGTCTTCAGGCAGGTCGCCGACACCGGCAGCTTCACCCGC 
GCCGCCGCCCTGCTCGGGGTGACGCCGGCGGCGGTGAGCCAGGCGATCAACCAACTGGAAGCCGAGCTGCGT 
CTCAAGCTGTTCCACCGCACCACCCGCGGGGTCAGCCTGAGCGAGGCCGGGCAGCGCTACCACGAACAGACC 
GAACAGCCCTACCGCGACCTGGTGCGCGCCCGCGAAGCGCTCGGCGAAAGCCTCGCGGAACCCTCCGGGCAG 
TTGCGCATCAGCGCCCTGCACCTGGCGAAGAACCTGGTGATCGCACCGATGCTCAACGAGTTCGTGCGACGC 
TACCCGAAGGTGCAACTGGAGATCCGCTACGAGGACCAGTTGGTGGATATCGTCAGGGAACGGCTGGATGCC 
GGCATCCGCCTGGCCGACGCCCTGCAGCCGGGCATGGTCGGGGTGCAACTGACAGCGCCGCTCGCGTGCCTG 
CTGGTGGCCACTCCGGCCTACCTCGCCGAGCACGGTACGCCGGCCAGCGTCGCCGACCTCGATGGGCATGCC 
GCCGTGCGCTTCCGTTTCCCGCGCAGCGGCCGCCTGCACAAGTGGCGCTTGCGGGAAGACGGGCGGGAACTG 
GAAGTGGACCTGCCGGCACGCTTCGTCAGCACCGACACCGAGACGATCATCGAGGCGGCCCGCGCCGGCGCC 
GGGATCGCCCAGGCATTCATCCGCGAGCGGGTCGCCGCGGACCTCGCCGCCGGGCGCCTGGTGGAAGTGCTG 
CCTGGCAGTTGCCTGCCGCTGCCGCCGATGTGGCTGTATTACCTGAACCGCCGCCACGTACCGGCCAAGCTG 
CGCGCCTTCATCGAACTGCTACGCGAGTGGCGGCAGCCGGCCTGA