ViewGene
Locus Name:
GeneID:
Location:

GeneID:2571
TrivialName: PA14_48350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48350
PAO1 Ortholog Locus:PA1231
Sequence Length:909
Protein Length:302
Start: 4302869
Stop: 4301961
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04620.1|AE004552_10 (AE004552) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 301/302 (99%), Positives = 301/302 (99%)
Sequence:
ATGTCCATCGTTCGTCTTTCCAAGGTGGCTGCGACCTTCGCCTGCGGCCTGCTCGCCCTGTGCCTGGCGTTG
CAGTTGTGGCAAGCCTACGTGCTGGCGCCCTGGACCCGCGACGGGCGGGTCAGCGCGCAGGTGATTCGCATC
GCGCCGGAAGTTTCCGGCAGCGTCGAGGCGGTGCTCGTCGCAGATAACCAGCGGGTGGCCCGCGGCGATCCG
CTGTACCGCATCGATCCGCGCAGCTATCGCCTGGCCGTGCGCCAGCGCGAGGCGGAGCTGGAGCAGGCGCGG
GAAACCCTGCGCCAACGTGACGAGCAATGGCGCCGACGCATGCAGTTGGCCGGCGCGGTTTCGCGCGAGGAG
GTCGCCAACGCCGGTCGCGCCCTGCGTATCGCCCGCGCCCGCGCCGAGGCCGCTGGGGCGGCGCTCGACCAG
GCGCGGCTGGACCTGCGGCGCAGCGAGTTGCGCTCGCCGGTGGACGGCTATGTGACGCAGTTGCGCGTGCAG
CCCGGCGATTACGCGGCGGCGGGCCGGACCAACATCTTCATCGTCGATCGGCGAAGCTTCTGGGTCACCGGC
TATTTCGAGGAAACCAAGCTGCGCAATGTACAGGTCGGCGCGCCGGCGACGATCAAGCTGATGGGGTTCGAT
CCGCTGCTCGACGGCCATGTCGCGAGCATCGGTCGCGGTGTCGCCGACCTCAACGAAAGCCGTGCCGACAGC
GGCCTGCCGCAGGTCAGCCCGAACTTCAGCTGGATACGCCTGGCGCAGCGCGTGCCGGTGCGCATCGAACTC
GACCGGGTACCGGCGGGCGTGGTGCTTGCCGCCGGCATGACCGGCAGTGTCGAGGTGCTGCAGGCGGGGACC
GCGCGGCACTGGCGGCTGACCCGCTGGTTGCAGGAGTACCTTTGA
Translation:
MSIVRLSKVAATFACGLLALCLALQLWQAYVLAPWTRDGRVSAQVIRIAPEVSGSVEAVLVADNQRVARGDP
LYRIDPRSYRLAVRQREAELEQARETLRQRDEQWRRRMQLAGAVSREEVANAGRALRIARARAEAAGAALDQ
ARLDLRRSELRSPVDGYVTQLRVQPGDYAAAGRTNIFIVDRRSFWVTGYFEETKLRNVQVGAPATIKLMGFD
PLLDGHVASIGRGVADLNESRADSGLPQVSPNFSWIRLAQRVPVRIELDRVPAGVVLAAGMTGSVEVLQAGT
ARHWRLTRWLQEYL*
AnnotationID:2579GeneID:2571
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 08:08:00
Gene Name:
Confidence Code:3
GeneProduct:putative membrain protein
Cell Localization:()
Synonyms:PA1231
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1566
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54747.1| (AE016860) fusaric acid resistance protein, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 286

 Score =  224 bits (570), Expect = 6e-58
 Identities = 128/274 (46%), Positives = 170/274 (62%), Gaps = 2/274 (0%)

>gb|AAN66777.1|AE016306_3 (AE016778) membrane fusion protein, putative [Pseudomonas putida
           KT2440]
          Length = 289

 Score =  224 bits (570), Expect = 6e-58
 Identities = 123/277 (44%), Positives = 166/277 (59%), Gaps = 1/277 (0%)

>emb|CAE33575.1| (BX640446) putative HlyD family secretion protein [Bordetella
           bronchiseptica]
          Length = 297

 Score =  219 bits (559), Expect = 1e-56
 Identities = 124/282 (43%), Positives = 165/282 (58%)








 
Structural Features:
COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]
CD-Length = 352 residues,  96.9% aligned
Score =  225 bits (575), Expect = 4e-60
Identities = 125/344 (36%), Positives = 160/344 (46%), Gaps = 52/344 (15%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5145




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22290




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38048




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2571_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2571
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4269
                           PA1231_tr
                           translation of PA1231
                           302
                           99.66
                           99.66
                           0
                           1516.0
     

     
     
125612
                           gb|AAG04620.1|AE004552_10
                           (AE004552) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           302
                           99.66
                           99.66
                           0
                           1516.0
     

     
     
125613
                           emb|CAE28151.1|
                           (BX572601) possible FusE-MFP/HlyD family membrane fusion protein [Rhodopseudomonas palustris CGA009]
                           312
                           49.03
                           64.42
                           22
                           735.0
     

     
     
125618
                           gb|AAO54747.1|
                           (AE016860) fusaric acid resistance protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           310
                           42.58
                           57.41
                           32
                           574.0
     

     
     
4271
                           PA3304_tr
                           translation of PA3304
                           311
                           41.80
                           55.94
                           35
                           554.0
     

     






      

          
GC ORFID: 45573How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1231Glimmer Score: 

          
Start: 651039Stop: 651947

          
Length: 909


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1231 translation of PA1231Homolog Bit Score 588.0

          
Other Homologs:  t_PA3892 (ORF: BLASTX 225.0), psyr_15may02_Scaffold3_revised_gene4368 (ORF: BLASTX 222.0), t_PA3304 (ORF: BLASTX 217.0), psyr_15may02_Scaffold9_revised_gene8201 (ORF: BLASTX 207.0), t_PA1231 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCATCGTTCGTCTTTCCAAGGTGGCTGCGACCTTCGCCTGCGGCCTGCTCGCCCTGTGCCTGGCGTTG 
CAGTTGTGGCAAGCCTACGTGCTGGCGCCCTGGACCCGCGACGGGCGGGTCAGCGCGCAGGTGATTCGCATC 
GCGCCGGAAGTTTCCGGCAGCGTCGAGGCGGTGCTCGTCGCAGATAACCAGCGGGTGGCCCGCGGCGATCCG 
CTGTACCGCATCGATCCGCGCAGCTATCGCCTGGCCGTGCGCCAGCGCGAGGCGGAGCTGGAGCAGGCGCGG 
GAAACCCTGCGCCAACGTGACGAGCAATGGCGCCGACGCATGCAGTTGGCCGGCGCGGTTTCGCGCGAGGAG 
GTCGCCAACGCCGGTCGCGCCCTGCGTATCGCCCGCGCCCGCGCCGAGGCCGCTGGGGCGGCGCTCGACCAG 
GCGCGGCTGGACCTGCGGCGCAGCGAGTTGCGCTCGCCGGTGGACGGCTATGTGACGCAGTTGCGCGTGCAG 
CCCGGCGATTACGCGGCGGCGGGCCGGACCAACATCTTCATCGTCGATCGGCGAAGCTTCTGGGTCACCGGC 
TATTTCGAGGAAACCAAGCTGCGCAATGTACAGGTCGGCGCGCCGGCGACGATCAAGCTGATGGGGTTCGAT 
CCGCTGCTCGACGGCCATGTCGCGAGCATCGGTCGCGGTGTCGCCGACCTCAACGAAAGCCGTGCCGACAGC 
GGCCTGCCGCAGGTCAGCCCGAACTTCAGCTGGATACGCCTGGCGCAGCGCGTGCCGGTGCGCATCGAACTC 
GACCGGGTACCGGCGGGCGTGGTGCTTGCCGCCGGCATGACCGGCAGTGTCGAGGTGCTGCAGGCGGGGACC 
GCGCGGCACTGGCGGCTGACCCGCTGGTTGCAGGAGTACCTTTGA