ViewGene
Locus Name:
GeneID:
Location:

GeneID:2570
TrivialName: PA14_49650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49650
PAO1 Ortholog Locus:PA1140
Sequence Length:837
Protein Length:278
Start: 4417840
Stop: 4418676
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04529.1|AE004544_1 (AE004544) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 278/278 (100%), Positives = 278/278 (100%)
Sequence:
ATGTCCAAGTCCAGCTACTACGCGCCGCACGGCGGGCACCCGGCACAGACCGAGCTGCTCACCGACCGGGCG
ATGTTCACCGAAGCCTATGCCGTGATTCCCAAGGGGGTGATGCGCGATATCGTCACCAGCCACCTGCCGTTC
TGGGACAACATGCGCATGTGGGTGATCGCCCGCCCGCTGTCCGGCTTCGCCGAGACCTTCTCGCAGTACATC
GTCGAACTGGCGCCCAACGGCGGCAGCGACAAACCGGAGCAGGATCCCAACGCCGAGGCCGTGCTGTTCGTC
GTCGAAGGCGAGCTGAGCCTGACCCTGCAGGGCCAGGTCCACGCCATGCAGCCGGGCGGCTACGCCTTCATT
CCGCCGGGCGCCGACTACAAGGTGCGCAATACCACCGGCCAGCACACCCGCTTCCACTGGATCCGCAAGCAC
TACCAGAAGGTCGACGGCGTACCGCTGCCGGAAGCCTTCGTCACCAACGAGCAGGACATCCAGCCGCTGGTG
ATGCCGGACACCGAAGGCCGCTGGAGCACCACCCGCTTCGTCGACATGAGCGACATGCGCCACGACATGCAC
GTCAACATCGTCAACTTCGAGCCGGGCGGCGTGATCCCCTTCGCCGAGACCCACGTGATGGAGCACGGCCTG
TACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAGGTGGAGGCCGGCGACTTCATG
TGGCTGCGCGCCTTCTGCCCGCAGGCCTGCTATTCGGGCGGCCCGGGGCGCTTCCGCTACCTGCTGTACAAG
GATGTCAACCGGCACATGCGCCTGACTCTCAATGCGCCGCATTGA
Translation:
MSKSSYYAPHGGHPAQTELLTDRAMFTEAYAVIPKGVMRDIVTSHLPFWDNMRMWVIARPLSGFAETFSQYI
VELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKH
YQKVDGVPLPEAFVTNEQDIQPLVMPDTEGRWSTTRFVDMSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGL
YVLEGKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVNRHMRLTLNAPH*
AnnotationID:2578GeneID:2570
AnnotatorUID: danlee
Modification Date/Time: 2004-09-10 13:01:41
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1140, ylbA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3257, pfam06038
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate 
utilization. Score: 434, 6e-123
pfam06038, DUF923, Protein of unknown function. Score: 351, 6e-98






   
Genomic Context:






   
Comment:


















    ReferenceID:5143




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22288




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2570
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4268
                           PA1140_tr
                           translation of PA1140
                           278
                           99.99
                           99.99
                           0
                           1515.0
     

     
     
125603
                           gb|AAG04529.1|AE004544_1
                           (AE004544) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           278
                           99.99
                           99.99
                           0
                           1515.0
     

     
     
125604
                           gb|AAN69131.1|AE016546_12
                           (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440]
                           278
                           77.33
                           88.12
                           0
                           1213.0
     

     
     
125605
                           emb|CAC49791.1|
                           (AL603646) conserved hypothetical protein [Sinorhizobium meliloti]
                           281
                           74.73
                           84.69
                           6
                           1167.0
     

     
     
125606
                           dbj|BAB51632.1|
                           (AP003005) hypothetical protein [Mesorhizobium loti]
                           282
                           71.27
                           81.56
                           4
                           1115.0
     

     






      

          
GC ORFID: 45572How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1140Glimmer Score: 

          
Start: 536068Stop: 535232

          
Length: 837


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1140 translation of PA1140Homolog Bit Score 588.0

          
Other Homologs:  t_PA1140 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAAGTCCAGCTACTACGCGCCGCACGGCGGGCACCCGGCACAGACCGAGCTGCTCACCGACCGGGCG 
ATGTTCACCGAAGCCTATGCCGTGATTCCCAAGGGGGTGATGCGCGATATCGTCACCAGCCACCTGCCGTTC 
TGGGACAACATGCGCATGTGGGTGATCGCCCGCCCGCTGTCCGGCTTCGCCGAGACCTTCTCGCAGTACATC 
GTCGAACTGGCGCCCAACGGCGGCAGCGACAAACCGGAGCAGGATCCCAACGCCGAGGCCGTGCTGTTCGTC 
GTCGAAGGCGAGCTGAGCCTGACCCTGCAGGGCCAGGTCCACGCCATGCAGCCGGGCGGCTACGCCTTCATT 
CCGCCGGGCGCCGACTACAAGGTGCGCAATACCACCGGCCAGCACACCCGCTTCCACTGGATCCGCAAGCAC 
TACCAGAAGGTCGACGGCGTACCGCTGCCGGAAGCCTTCGTCACCAACGAGCAGGACATCCAGCCGCTGGTG 
ATGCCGGACACCGAAGGCCGCTGGAGCACCACCCGCTTCGTCGACATGAGCGACATGCGCCACGACATGCAC 
GTCAACATCGTCAACTTCGAGCCGGGCGGCGTGATCCCCTTCGCCGAGACCCACGTGATGGAGCACGGCCTG 
TACGTGCTGGAAGGCAAGGCGGTGTACCGCCTGAACCAGGACTGGGTCGAGGTGGAGGCCGGCGACTTCATG 
TGGCTGCGCGCCTTCTGCCCGCAGGCCTGCTATTCGGGCGGCCCGGGGCGCTTCCGCTACCTGCTGTACAAG 
GATGTCAACCGGCACATGCGCCTGACTCTCAATGCGCCGCATTGA