ViewGene
Locus Name:
GeneID:
Location:

GeneID:257
TrivialName: PA14_52940
AnnotatorUID: danlee
Modification Date/Time:2006-06-02 00:12:49
LocusName:PA14_52940
PAO1 Ortholog Locus:PA0875
Sequence Length:2196
Protein Length:731
Start: 4693405
Stop: 4695600
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04264.1|AE004522_6 (AE004522) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 729/731 (99%), Positives = 729/731 (99%)
Sequence:
GTGCCCCGCGCCACCCGGAAAGGTCTCCCCTTGGTTCCACCGGCTCCCCTCGCGTTCTTTCCCAGCCCCGAC
GAATTGCGCCGCGCCCTGCTCGAATGGGCGCGTAGCGACGGCGTCGCCTGGGTCTTCGTGTTCAAGGCCCTG
CTCACCGCCAGCCTCGCCCTGTGGCTGGCCTATCGCCTGGAGCTGCCGCAGCCAAGCACGGTGCTGGTGACG
GTCTTCATCGTCATGCAGACGCAGAGCGGGCAGGTCCTGGCCAAGAGCTTCTACCGCATCGTCGGAACCCTG
ATCGGCCTCAGCGTGATGGTCACTCTGATCGCCCTGTTCGCCCAGGAGCGTGTGCTGTTCCTCGCCTGCCTG
GCGCTCTGGGTCGGCCTGTGCACCGCCGGCGCCGCGCGCTACCGCGATTTCCGCGGCTACGCCTGCGTACTC
GCCGGCTACACCGCGACCATGATCGGGATTCCAGCCACTGCGCACCCGGAAGGCGCCTTCATGGCGGCGCTG
TGGCGGGTCCTGGAAATATCCCTGGGCATCCTCTGCACCGGTACCGTCAGCGCCATCTTCCTGCCGCAGACC
AGCGGCGCCGCCCTGCGCAACACACTCTACGGGCGCTTCCGCGACTTCGCCGGGTTCGCCGCCGAAGGCCTG
CAGGGCAGCCTCGACGGCGAGCGCTTCGGCGAGCTCAGCGCGCGCTTCGTCGCCCAGTCCGTGGGCCTGGAA
AACCTGCGCAGCGCCACTACTTTCGAAGATCCGCACATGCGCCTGCGCAGCGGCCGGCTGATTCGCCTGAAC
AACGAATTCATGGTCATGACCAGTCGCTTCCACGGCCTCCACCGCCTGCTCGAACGCCTGCGCGGGCGCGGC
GCGCAGAATGTCCTGGAGGTCCTGGCGCCCTGCCTGGCGGAGCTTGCCGGGCTGCTCGCGCCGATTCGCGAA
CGGACGCCCACCGACGCCGACGCCGCGCGCCTGGCCGAACGCATCGAGGCCTACAAGCCGGAACTGATGCAG
AACATCCGCCAGGCCCGCCAGCGCCTGGTGGAGCAGCGCCCCGGCGAGAACGACCTGCTGGATTTCAACACC
GCCGCCGAACTGGCCTTCCGTTTCACCGACGACCTGCACAACTACGCCCTGACCCACGCTTCCCTGGCCGAA
CACCACCATGCCCGCGAGCAATGGAAGGAAAGCTTCGTCGCCCGCGCCAACCCGGTCGCCGCGCTGGTCGCC
GGAGCGCGCAGCGCGCTGATGATCGGCCTGCTCGGCACGTTCTGGATCCAGACCTCCTGGCCCCACGGCGGC
ACCTTCGCCCTCACCGCGGTACTGATCTCGGCGCTCTCCTCGACCTCGCCGAATCCCGGCCGGTTGTCGCTG
CAACTCACCCTCGGGACCCTCGCCGGGGCCTGCACCGGGCTGTTCGTGCTGCTCTACCTGCTACCCCACGTG
GACGGTTTCCCGATGCTGCTCTGCTGCCTGCTGCCGGTCTTCGCGGTCGGCGCCCTGCTGCTCTGGCGGCCG
CAGTGGAACGGCTACGGCGTCGGCCTGCTGGTGTGGTTCTGCTTCGCCTCGCTGCCGGCCAACATGGCGCGC
TACGACGCCCTGGCCTTCTTCAACGAATACCTGGCACTACTCTTGTCGATGGTCCTCGCCACGGTCGCCGCC
AGGGTGATCCTGCCGCCGAACCGGCCGTGGATGTGGAAGCGCCTGGAGCACGACCTGCGCGAGCGGGTAGTG
TTCGCCATCAGCGGCAAGAGCAAGGGCCTGGTCTCCGGTTTCGAAAGCGGCACCCGCGACCTGCTGAACCAG
GCCTACACCTTCTCCGCCGGCCGCCCGGACGTGCAGCGCCGGTTGCTGGGCTGGATGTTCCTGGTGCTGGAG
GTCGGCCAGGCGATCATCGAGCTGCGCCTCGAACAGCAACGCCTGCCCCAGGAGCCCTGCTACGCCGAACGC
ACCGCCTGGCGCCGGGCGATCCGCCTGATGGGCCGGGCGCTGATCCGGCTGTTCCTGCAACCCGGGCCGAGC
AACCGTCAGCGCGCCCTGCACGCGGTGAACCAGGCGATCATGGCGGTACGGGCGGCGCCGGAGCCGCGCGCA
CCGCAGTTCGATACCTCGCCGCTGCGACGGGTGCTCAGCTACCTGCACTTCATTCGCAGCGCCCTGCTCGAC
CCGCAATCGCCCCTGGGCCAGGAAAGAAACCCGTGA
Translation:
MPRATRKGLPLVPPAPLAFFPSPDELRRALLEWARSDGVAWVFVFKALLTASLALWLAYRLELPQPSTVLVT
VFIVMQTQSGQVLAKSFYRIVGTLIGLSVMVTLIALFAQERVLFLACLALWVGLCTAGAARYRDFRGYACVL
AGYTATMIGIPATAHPEGAFMAALWRVLEISLGILCTGTVSAIFLPQTSGAALRNTLYGRFRDFAGFAAEGL
QGSLDGERFGELSARFVAQSVGLENLRSATTFEDPHMRLRSGRLIRLNNEFMVMTSRFHGLHRLLERLRGRG
AQNVLEVLAPCLAELAGLLAPIRERTPTDADAARLAERIEAYKPELMQNIRQARQRLVEQRPGENDLLDFNT
AAELAFRFTDDLHNYALTHASLAEHHHAREQWKESFVARANPVAALVAGARSALMIGLLGTFWIQTSWPHGG
TFALTAVLISALSSTSPNPGRLSLQLTLGTLAGACTGLFVLLYLLPHVDGFPMLLCCLLPVFAVGALLLWRP
QWNGYGVGLLVWFCFASLPANMARYDALAFFNEYLALLLSMVLATVAARVILPPNRPWMWKRLEHDLRERVV
FAISGKSKGLVSGFESGTRDLLNQAYTFSAGRPDVQRRLLGWMFLVLEVGQAIIELRLEQQRLPQEPCYAER
TAWRRAIRLMGRALIRLFLQPGPSNRQRALHAVNQAIMAVRAAPEPRAPQFDTSPLRRVLSYLHFIRSALLD
PQSPLGQERNP*
AnnotationID:267GeneID:257
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 00:12:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1289
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|9946774|gb|AAG04264.1|  conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|15596072|ref|NP_249566.1|  hypothetical protein PA0875 [Pseudomonas aeruginosa PAO1]
Length=731

 Score = 1348 bits (3490),  Expect = 0.0
 Identities = 729/731 (99%), Positives = 729/731 (99%), Gaps = 0/731 (0%)

gi|84322684|ref|ZP_00970768.1|  COG1289: Predicted membrane protein [Pseudomonas aeruginosa 2192]
 gi|84316645|ref|ZP_00965117.1|  COG1289: Predicted membrane protein [Pseudomonas aeruginosa C3719]
Length=706

 Score = 1335 bits (3455),  Expect = 0.0
 Identities = 704/706 (99%), Positives = 705/706 (99%), Gaps = 0/706 (0%)

gi|94418023|ref|ZP_01297839.1|  hypothetical protein PaerP_01000172 [Pseudomonas aeruginosa PA7]
Length=707

 Score = 1304 bits (3374),  Expect = 0.0
 Identities = 689/700 (98%), Positives = 693/700 (99%), Gaps = 0/700 (0%)

gi|84325626|ref|ZP_00973661.1|  COG1289: Predicted membrane protein [Pseudomonas aeruginosa 2192]
Length=731

 Score =  894 bits (2309),  Expect = 0.0
 Identities = 465/702 (66%), Positives = 549/702 (78%), Gaps = 0/702 (0%)






 
Structural Features:
COG1289, Predicted membrane protein [Function unknown].
E-value 2e-93






   
Genomic Context:






   
Comment:


















    ReferenceID:14095




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17659




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:257
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
432
                           PA0875_tr
                           translation of PA0875
                           731
                           99.72
                           99.72
                           0
                           3743.0
     

     
     
23538
                           gb|AAG04264.1|AE004522_6
                           (AE004522) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           731
                           99.58
                           99.72
                           0
                           3740.0
     

     
     
433
                           PA3893_tr
                           translation of PA3893
                           742
                           63.07
                           74.52
                           22
                           2412.0
     

     
     
23539
                           gb|AAG07280.1|AE004806_7
                           (AE004806) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           742
                           63.07
                           74.52
                           22
                           2412.0
     

     
     
23540
                           gb|AAN66888.1|AE016317_5
                           (AE016778) fusaric acid resistance protein, putative [Pseudomonas putida KT2440]
                           735
                           53.74
                           67.34
                           14
                           2005.0
     

     






      

          
GC ORFID: 43259How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0875Glimmer Score: 

          
Start: 260502Stop: 258307

          
Length: 2196


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0875 translation of PA0875Homolog Bit Score 1446.0

          
Other Homologs:  t_PA3893 (ORF: BLASTX 939.0), psyr_15may02_Scaffold3_revised_gene4366 (ORF: BLASTX 785.0), t_PA0875 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCCCGCGCCACCCGGAAAGGTCTCCCCTTGGTTCCACCGGCTCCCCTCGCGTTCTTTCCCAGCCCCGAC 
GAATTGCGCCGCGCCCTGCTCGAATGGGCGCGTAGCGACGGCGTCGCCTGGGTCTTCGTGTTCAAGGCCCTG 
CTCACCGCCAGCCTCGCCCTGTGGCTGGCCTATCGCCTGGAGCTGCCGCAGCCAAGCACGGTGCTGGTGACG 
GTCTTCATCGTCATGCAGACGCAGAGCGGGCAGGTCCTGGCCAAGAGCTTCTACCGCATCGTCGGAACCCTG 
ATCGGCCTCAGCGTGATGGTCACTCTGATCGCCCTGTTCGCCCAGGAGCGTGTGCTGTTCCTCGCCTGCCTG 
GCGCTCTGGGTCGGCCTGTGCACCGCCGGCGCCGCGCGCTACCGCGATTTCCGCGGCTACGCCTGCGTACTC 
GCCGGCTACACCGCGACCATGATCGGGATTCCAGCCACTGCGCACCCGGAAGGCGCCTTCATGGCGGCGCTG 
TGGCGGGTCCTGGAAATATCCCTGGGCATCCTCTGCACCGGTACCGTCAGCGCCATCTTCCTGCCGCAGACC 
AGCGGCGCCGCCCTGCGCAACACACTCTACGGGCGCTTCCGCGACTTCGCCGGGTTCGCCGCCGAAGGCCTG 
CAGGGCAGCCTCGACGGCGAGCGCTTCGGCGAGCTCAGCGCGCGCTTCGTCGCCCAGTCCGTGGGCCTGGAA 
AACCTGCGCAGCGCCACTACTTTCGAAGATCCGCACATGCGCCTGCGCAGCGGCCGGCTGATTCGCCTGAAC 
AACGAATTCATGGTCATGACCAGTCGCTTCCACGGCCTCCACCGCCTGCTCGAACGCCTGCGCGGGCGCGGC 
GCGCAGAATGTCCTGGAGGTCCTGGCGCCCTGCCTGGCGGAGCTTGCCGGGCTGCTCGCGCCGATTCGCGAA 
CGGACGCCCACCGACGCCGACGCCGCGCGCCTGGCCGAACGCATCGAGGCCTACAAGCCGGAACTGATGCAG 
AACATCCGCCAGGCCCGCCAGCGCCTGGTGGAGCAGCGCCCCGGCGAGAACGACCTGCTGGATTTCAACACC 
GCCGCCGAACTGGCCTTCCGTTTCACCGACGACCTGCACAACTACGCCCTGACCCACGCTTCCCTGGCCGAA 
CACCACCATGCCCGCGAGCAATGGAAGGAAAGCTTCGTCGCCCGCGCCAACCCGGTCGCCGCGCTGGTCGCC 
GGAGCGCGCAGCGCGCTGATGATCGGCCTGCTCGGCACGTTCTGGATCCAGACCTCCTGGCCCCACGGCGGC 
ACCTTCGCCCTCACCGCGGTACTGATCTCGGCGCTCTCCTCGACCTCGCCGAATCCCGGCCGGTTGTCGCTG 
CAACTCACCCTCGGGACCCTCGCCGGGGCCTGCACCGGGCTGTTCGTGCTGCTCTACCTGCTACCCCACGTG 
GACGGTTTCCCGATGCTGCTCTGCTGCCTGCTGCCGGTCTTCGCGGTCGGCGCCCTGCTGCTCTGGCGGCCG 
CAGTGGAACGGCTACGGCGTCGGCCTGCTGGTGTGGTTCTGCTTCGCCTCGCTGCCGGCCAACATGGCGCGC 
TACGACGCCCTGGCCTTCTTCAACGAATACCTGGCACTACTCTTGTCGATGGTCCTCGCCACGGTCGCCGCC 
AGGGTGATCCTGCCGCCGAACCGGCCGTGGATGTGGAAGCGCCTGGAGCACGACCTGCGCGAGCGGGTAGTG 
TTCGCCATCAGCGGCAAGAGCAAGGGCCTGGTCTCCGGTTTCGAAAGCGGCACCCGCGACCTGCTGAACCAG 
GCCTACACCTTCTCCGCCGGCCGCCCGGACGTGCAGCGCCGGTTGCTGGGCTGGATGTTCCTGGTGCTGGAG 
GTCGGCCAGGCGATCATCGAGCTGCGCCTCGAACAGCAACGCCTGCCCCAGGAGCCCTGCTACGCCGAACGC 
ACCGCCTGGCGCCGGGCGATCCGCCTGATGGGCCGGGCGCTGATCCGGCTGTTCCTGCAACCCGGGCCGAGC 
AACCGTCAGCGCGCCCTGCACGCGGTGAACCAGGCGATCATGGCGGTACGGGCGGCGCCGGAGCCGCGCGCA 
CCGCAGTTCGATACCTCGCCGCTGCGACGGGTGCTCAGCTACCTGCACTTCATTCGCAGCGCCCTGCTCGAC 
CCGCAATCGCCCCTGGGCCAGGAAAGAAACCCGTGA