ViewGene
Locus Name:
GeneID:
Location:

GeneID:2569
TrivialName: PA14_49710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49710
PAO1 Ortholog Locus:PA1135
Sequence Length:876
Protein Length:291
Start: 4422630
Stop: 4423505
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04524.1|AE004543_8 (AE004543) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 287/291 (98%), Positives = 288/291 (98%)
Sequence:
ATGAGCAACGAGCGCGACACCAGCAGAACCCCGACGCCCGACCACGCCGAGCACAACGCGTTCTTTCCCTCG
CCCTATTCCCTGAGCCAGTACACCTCGGCGAAGACCGACTTCGACGGCGCCGACTACCCGACCCCGTACAAC
GGCGGCAAGAAGGTGCTGATGATCGGTACCGACGAACGCTACATCCTGATGCAGAACGGCAGCATGTTCTCC
ACCGGCAACCACCCGGTGGAAATGCTCCTGCCGATGTATCACCTGGACAAGGCCGGCTTCGAGTTCGATGTC
GCCACGCTCTCCGGCAACCCGGTGAAGCTGGAGATGTGGGCGATGCCCGGCGAGGACGAGGCGGTGAAGAGC
ATCTACGCGAAGTACCTGCCCAAGCTGAAAGCGCCGCAGAAGCTCGCCGACCTCCTGGAGCAGGCCGTCGCC
GACGACTCGCCGTACGCCGCGGTGTTCGTTCCCGGCGGCCACGGCGTGCTGGCGGGCATTCCGCACAGCCGG
GAGGTGAAACGGCTGCTCAATGCCTTCCTCGCCAAGGACCGCTACATCATCACCCTTTGCCACGGTCCGGCC
TGCCTGCTGGCACCGGCGGTCGAGGAGAAGCCGGAGGACTACCCGTTCAAGGGCTACGAGATCTGCGTGTTC
CCTGACGCCCTGGACACCGGCGCCAACCTGGAAATCGGCTACATGCCGGGCCCGCTGCCCTGGCTGGTGGGC
GAGAACCTGCAGAAGCTCGGGGTGAAGATCCTCAACAAGGGCATCACCGGCCAGGTCCACCGCGACCGCAAG
CTGCTCACCGGCGACAGCCCGCTGGCCTCCAACAACCTTGGCAAGCTGGCCGCCAAGACCCTTCTCGAAGCG
TTCGCCCGCTGA
Translation:
MSNERDTSRTPTPDHAEHNAFFPSPYSLSQYTSAKTDFDGADYPTPYNGGKKVLMIGTDERYILMQNGSMFS
TGNHPVEMLLPMYHLDKAGFEFDVATLSGNPVKLEMWAMPGEDEAVKSIYAKYLPKLKAPQKLADLLEQAVA
DDSPYAAVFVPGGHGVLAGIPHSREVKRLLNAFLAKDRYIITLCHGPACLLAPAVEEKPEDYPFKGYEICVF
PDALDTGANLEIGYMPGPLPWLVGENLQKLGVKILNKGITGQVHRDRKLLTGDSPLASNNLGKLAAKTLLEA
FAR*
AnnotationID:2577GeneID:2569
AnnotatorUID: danlee
Modification Date/Time: 2004-09-08 17:05:16
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1135, yedU
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]
       CD-Length = 188 residues,  98.9% aligned.
       Score = 74.4 bits (182), Expect = 2e-14






   
Genomic Context:






   
Comment:


















    ReferenceID:5141




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22286




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2569
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4267
                           PA1135_tr
                           translation of PA1135
                           291
                           98.62
                           98.96
                           0
                           1515.0
     

     
     
125592
                           gb|AAG04524.1|AE004543_8
                           (AE004543) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           291
                           98.62
                           98.96
                           0
                           1515.0
     

     
     
125593
                           dbj|BAB41740.1|
                           (AP003130) conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315]
                           294
                           58.84
                           73.80
                           5
                           905.0
     

     
     
125594
                           dbj|BAB56713.1|
                           (AP003359) conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
                           294
                           58.84
                           73.80
                           5
                           905.0
     

     
     
125595
                           dbj|BAB94371.1|
                           (AP004823) conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
                           294
                           58.50
                           73.46
                           5
                           897.0
     

     






      

          
GC ORFID: 45571How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1135Glimmer Score: 

          
Start: 531278Stop: 530403

          
Length: 876


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1135 translation of PA1135Homolog Bit Score 588.0

          
Other Homologs:  t_PA1135 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAACGAGCGCGACACCAGCAGAACCCCGACGCCCGACCACGCCGAGCACAACGCGTTCTTTCCCTCG 
CCCTATTCCCTGAGCCAGTACACCTCGGCGAAGACCGACTTCGACGGCGCCGACTACCCGACCCCGTACAAC 
GGCGGCAAGAAGGTGCTGATGATCGGTACCGACGAACGCTACATCCTGATGCAGAACGGCAGCATGTTCTCC 
ACCGGCAACCACCCGGTGGAAATGCTCCTGCCGATGTATCACCTGGACAAGGCCGGCTTCGAGTTCGATGTC 
GCCACGCTCTCCGGCAACCCGGTGAAGCTGGAGATGTGGGCGATGCCCGGCGAGGACGAGGCGGTGAAGAGC 
ATCTACGCGAAGTACCTGCCCAAGCTGAAAGCGCCGCAGAAGCTCGCCGACCTCCTGGAGCAGGCCGTCGCC 
GACGACTCGCCGTACGCCGCGGTGTTCGTTCCCGGCGGCCACGGCGTGCTGGCGGGCATTCCGCACAGCCGG 
GAGGTGAAACGGCTGCTCAATGCCTTCCTCGCCAAGGACCGCTACATCATCACCCTTTGCCACGGTCCGGCC 
TGCCTGCTGGCACCGGCGGTCGAGGAGAAGCCGGAGGACTACCCGTTCAAGGGCTACGAGATCTGCGTGTTC 
CCTGACGCCCTGGACACCGGCGCCAACCTGGAAATCGGCTACATGCCGGGCCCGCTGCCCTGGCTGGTGGGC 
GAGAACCTGCAGAAGCTCGGGGTGAAGATCCTCAACAAGGGCATCACCGGCCAGGTCCACCGCGACCGCAAG 
CTGCTCACCGGCGACAGCCCGCTGGCCTCCAACAACCTTGGCAAGCTGGCCGCCAAGACCCTTCTCGAAGCG 
TTCGCCCGCTGA