ViewGene
Locus Name:
GeneID:
Location:

GeneID:2568
TrivialName: PA14_02620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02620
PAO1 Ortholog Locus:PA0214
Sequence Length:933
Protein Length:310
Start: 232593
Stop: 233525
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03603.1|AE004459_7 (AE004459) probable acyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 305/310 (98%), Positives = 308/310 (99%)
Sequence:
ATGAGCGTGCTGTTCGCCTATCCCGGCCAGGGCGCCCAACGTCCCGGCATGCTCGCGGCCTTGCCCGACGAA
CCGCCGGTGCGCGCCTGCCTGGAGCAGGCGGCGGACTGTCTCGGCCAGGCGCCGGCCGAACTGGAGAGCGCC
GAGGCCTTGCGCGGCACCCGCGCGGTGCAGTTGTGCCTGCTGATCGCCGGGGTCGCCGCCAGCCGCCTGCTG
GAGACGCGCGGGCATCGGCCGGGGCTGGTCGCCGGGCTGTCCATCGGCGCCTATCCGGCGGCGGTGGTGGCC
GGCGCGCTGGACTTCGACGACGCGCTGCGTCTGGTGGCGCTGCGCGGCGAACTGATGCAGGCCGCCTGGCCC
GAGGGCTACGGGATGAGCGCCATCCTCGGTCTCGACCAGGCGCAACTGGATGCGCTGATCCTGATGGTGCGG
CGCGAGCACCCGCCGCTCTACCTGGCCAACGTCAACGCCGAGCGGCAACTGGTGGTGGCCGGCAGCGAAGCG
GCGCTGGCCGCCCTCGCCGAACGCGCGCGTGCCGCCGGCGCCAGCGCGGCGAAGCGCCTGGCGGTGAGCGTA
CCGTCGCACTGTGCGCTGCTCGACGAACCgGccGCGCGCCTGGCCGAAGCGTTCGCCGGTGTCCGCCTGCGT
CGGCCGCGCGTGCCCTACCTGAGCAGCAGCCGGGCGCGCCTGGTCGCCGAACCGGCCGCGCTGGCCGACGAT
CTCGCCGGCAACATGGCGCGCCGCGTCGAGTGGCTGGCGACATTGCGCAGCGCCTACGAGCGCGGTGCCCGC
CTGCATCTCGAGCTGCCGCCGGGACGGGTCCTCAGCGGTCTGGCGCGGCCTCTGTTCGGCTGCGCCACGCCG
GCCTTCGAAGGCTCCCGGGCGGATACCCTGGACGCGCTGTTGCGCGAGGAGGAAAAGAGAACCCGATAA
Translation:
MSVLFAYPGQGAQRPGMLAALPDEPPVRACLEQAADCLGQAPAELESAEALRGTRAVQLCLLIAGVAASRLL
ETRGHRPGLVAGLSIGAYPAAVVAGALDFDDALRLVALRGELMQAAWPEGYGMSAILGLDQAQLDALILMVR
REHPPLYLANVNAERQLVVAGSEAALAALAERARAAGASAAKRLAVSVPSHCALLDEPAARLAEAFAGVRLR
RPRVPYLSSSRARLVAEPAALADDLAGNMARRVEWLATLRSAYERGARLHLELPPGRVLSGLARPLFGCATP
AFEGSRADTLDALLREEEKRTR*
AnnotationID:2576GeneID:2568
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 12:12:13
Gene Name:
Confidence Code:3
GeneProduct:putative epsilon subunit of malonate decarboxylase
Cell Localization:()
Synonyms:mdcH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:putative malonyl-CoA:acyl carrier protein transacylase
Functional Category Confidence Code:5
COGs:COG0331
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58508.1| (AE016874) malonyl CoA-acyl carrier protein transacylase, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 311

 Score =  359 bits (922), Expect = 1e-98
 Identities = 186/310 (60%), Positives = 236/310 (76%), Gaps = 1/310 (0%)

>dbj|BAA36210.1| (AB017138) epsilon subunit of malonate decarboxylase [Pseudomonas
           putida]
          Length = 306

 Score =  347 bits (889), Expect = 7e-95
 Identities = 189/306 (61%), Positives = 232/306 (75%), Gaps = 6/306 (1%)

>gb|AAC45460.1| (U95087) MdcH [Klebsiella pneumoniae]
          Length = 300

 Score =  302 bits (774), Expect = 1e-81
 Identities = 165/280 (58%), Positives = 209/280 (74%), Gaps = 8/280 (2%)






 
Structural Features:
COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
CD-Length = 310 residues,  97.4% aligned
Score =  224 bits (571), Expect = 1e-59
Identities = 108/303 (35%), Positives = 155/303 (51%), Gaps = 8/303 (2%)








   
Genomic Context:






   
Comment:


















    ReferenceID:5139




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22284




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33578




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2568_cdd.html


    		




 
URL:

















    ReferenceID:35462




  
Author/Investigator(s):
        Chohnan S, Kurusu Y, Nishihara H, Takamura Y.





  
Title:
        Cloning and characterization of mdc genes encoding malonate decarboxylase from Pseudomonas putida.




  
PubMed:
        10339824


MedLine:
        




    
Source:
FEMS Microbiol Lett. 1999 May 15;174(2):311-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10339824









           
Homologs By Global Alignment 

           

       



     
Gene ID:2568
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4266
                           PA0214_tr
                           translation of PA0214
                           310
                           98.38
                           99.35
                           0
                           1519.0
     

     
     
125587
                           gb|AAG03603.1|AE004459_7
                           (AE004459) probable acyl transferase [Pseudomonas aeruginosa PAO1]
                           310
                           98.38
                           99.35
                           0
                           1519.0
     

     
     
125589
                           dbj|BAA36210.1|
                           (AB017138) epsilon subunit of malonate decarboxylase [Pseudomonas putida]
                           314
                           60.82
                           74.52
                           12
                           899.0
     

     
     
125588
                           gb|AAO58508.1|
                           (AE016874) malonyl CoA-acyl carrier protein transacylase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           311
                           59.80
                           75.88
                           1
                           922.0
     

     
     
125590
                           gb|AAC45460.1|
                           (U95087) MdcH [Klebsiella pneumoniae]
                           318
                           54.08
                           68.55
                           26
                           778.0
     

     






      

          
GC ORFID: 45570How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0214Glimmer Score: 

          
Start: 6033934Stop: 6034866

          
Length: 933


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0214 translation of PA0214Homolog Bit Score 589.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3323 (ORF: BLASTX 352.0), t_PA0214 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGTGCTGTTCGCCTATCCCGGCCAGGGCGCCCAACGTCCCGGCATGCTCGCGGCCTTGCCCGACGAA 
CCGCCGGTGCGCGCCTGCCTGGAGCAGGCGGCGGACTGTCTCGGCCAGGCGCCGGCCGAACTGGAGAGCGCC 
GAGGCCTTGCGCGGCACCCGCGCGGTGCAGTTGTGCCTGCTGATCGCCGGGGTCGCCGCCAGCCGCCTGCTG 
GAGACGCGCGGGCATCGGCCGGGGCTGGTCGCCGGGCTGTCCATCGGCGCCTATCCGGCGGCGGTGGTGGCC 
GGCGCGCTGGACTTCGACGACGCGCTGCGTCTGGTGGCGCTGCGCGGCGAACTGATGCAGGCCGCCTGGCCC 
GAGGGCTACGGGATGAGCGCCATCCTCGGTCTCGACCAGGCGCAACTGGATGCGCTGATCCTGATGGTGCGG 
CGCGAGCACCCGCCGCTCTACCTGGCCAACGTCAACGCCGAGCGGCAACTGGTGGTGGCCGGCAGCGAAGCG 
GCGCTGGCCGCCCTCGCCGAACGCGCGCGTGCCGCCGGCGCCAGCGCGGCGAAGCGCCTGGCGGTGAGCGTA 
CCGTCGCACTGTGCGCTGCTCGACGAACCgGccGCGCGCCTGGCCGAAGCGTTCGCCGGTGTCCGCCTGCGT 
CGGCCGCGCGTGCCCTACCTGAGCAGCAGCCGGGCGCGCCTGGTCGCCGAACCGGCCGCGCTGGCCGACGAT 
CTCGCCGGCAACATGGCGCGCCGCGTCGAGTGGCTGGCGACATTGCGCAGCGCCTACGAGCGCGGTGCCCGC 
CTGCATCTCGAGCTGCCGCCGGGACGGGTCCTCAGCGGTCTGGCGCGGCCTCTGTTCGGCTGCGCCACGCCG 
GCCTTCGAAGGCTCCCGGGCGGATACCCTGGACGCGCTGTTGCGCGAGGAGGAAAAGAGAACCCGATAA