ViewGene

Locus Name:
GeneID:
Location:

GeneID:2567
TrivialName: PA14_68610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68610
PAO1 Ortholog Locus:PA5193
Sequence Length:894
Protein Length:297
Start: 6119228
Stop: 6118335
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08578.1|AE004932_5 (AE004932) heat shock protein HSP33 [Pseudomonas aeruginosa PAO1]
Identities = 296/297 (99%), Positives = 297/297 (100%)
Sequence:
ATGTCCCATTCAGATCAGAGCCAGCGTTTCCTTTTCGACGATACCGACGTGCGCGGCGAGATGGTCGATCTC
GAGCGTAGCTACAGCGAAGTGCTGGCCAAACATCCCTATCCGGAACCGGTCGCGCAACTGCTCGGGGAGATG
CTCGCGGCGGCCTCGCTGCTCTGCGGCACGCTCAAGTTCGACGGCCTGCTGGTATTGCAGGCGCGCTCCAGC
GGCGCGGTGCCGCTGTTGATGGTGGAGTGTTCCAGCGACCGCCAGGTGCGTGGCCTGGCCCGCTATTCGGCG
GAGTCCATCGGCGCCGACGCCGGCATGCAGGAACTGATGCCCGAAGGCGTGCTGACCCTCACCGTGGACCCG
GTCAAGGGCCAGCGCTACCAGGGGATCGTCGCCCTGGAGGGGGTGAACCTGGCGGAATGCCTGTCCAACTAC
TTCGCCAGCTCGGAACAGCTGCCGACCCGTTTCTGGCTCAACGCCAACGGCCGCCGCGCCCGCGGCCTGCTG
CTGCAGCAGCTTCCCGCCGACCGCCTGAAGGACCCCGAGGCCCGCGAGGCCAGTTGGCAGCACCTGACCACC
CTGGCCGACACGCTGACCGCCGAAGAGCTGCTGGCGCTGGACAACGAGACCGTCCTGCACCGCCTCTACCAC
GAGGAAACCGTGCGCCTGTTCGAGCCGCAACCGCTGGTCTTCCATTGCAGTTGCTCGCGGGAACGTTCGGCC
AACGCCCTGGTCAGTCTCGGGCAGGCCGACTGCGAGCGGCTGCTCGAGGAGGAAGAAGGCTCGATCACCATC
GACTGCCAGTTCTGCAACCAGCGCTACCTGTTCGACGCCTCCGACGTCGCCCAGTTGTTCGCTGGCGCTGGC
AGCCAGGGGCCTTCCGAGACCCGCCACTGA
Translation:
MSHSDQSQRFLFDDTDVRGEMVDLERSYSEVLAKHPYPEPVAQLLGEMLAAASLLCGTLKFDGLLVLQARSS
GAVPLLMVECSSDRQVRGLARYSAESIGADAGMQELMPEGVLTLTVDPVKGQRYQGIVALEGVNLAECLSNY
FASSEQLPTRFWLNANGRRARGLLLQQLPADRLKDPEAREASWQHLTTLADTLTAEELLALDNETVLHRLYH
EETVRLFEPQPLVFHCSCSRERSANALVSLGQADCERLLEEEEGSITIDCQFCNQRYLFDASDVAQLFAGAG
SQGPSETRH*
AnnotationID:2575GeneID:2567
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 17:05:10
Gene Name:hslO
Confidence Code:2
GeneProduct:putative chaperonin, 33 kDa
Cell Localization:()
Synonyms:yrfI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00498
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO53784.1| (AE016856) chaperonin, 33 kDa [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 300

 Score =  438 bits (1126), Expect = e-122
 Identities = 213/293 (72%), Positives = 253/293 (86%)

>gb|AAN65884.1|AE016216_5 (AE016775) chaperonin, 33 kDa [Pseudomonas putida KT2440]
          Length = 299

 Score =  393 bits (1009), Expect = e-109
 Identities = 192/294 (65%), Positives = 234/294 (79%), Gaps = 1/294 (0%)

>gb|AAN53250.1|AE015466_10 (AE015466) chaperonin HslO [Shewanella oneidensis MR-1]
          Length = 286

 Score =  258 bits (659), Expect = 3e-68
 Identities = 129/281 (45%), Positives = 191/281 (67%), Gaps = 7/281 (2%)
Structural Features:
cd00498, Hsp33, Heat shock protein 33 (Hsp33)
CD-Length = 275 residues,  99.6% aligned
Score =  284 bits (727), Expect = 1e-77
Identities = 112/279 (40%), Positives = 155/279 (55%), Gaps = 15/279 (5%)
Genomic Context:
Comment:
ReferenceID:5137
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22282
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34904
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2567_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2567

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4265 PA5193_tr translation of PA5193 297 99.66 99.99 0 1518.0
125561 gb|AAG08578.1|AE004932_5 (AE004932) heat shock protein HSP33 [Pseudomonas aeruginosa PAO1] 297 99.66 99.99 0 1518.0
125562 gb|AAO53784.1| (AE016856) chaperonin, 33 kDa [Pseudomonas syringae pv. tomato str. DC3000] 300 71.00 84.33 3 1122.0
125563 gb|AAN65884.1|AE016216_5 (AE016775) chaperonin, 33 kDa [Pseudomonas putida KT2440] 300 64.00 78.33 4 1011.0
125566 emb|CAC89002.1| (AJ414141) heat-shock chaperonin [Yersinia pestis CO92] 302 45.36 62.91 14 645.0
GC ORFID: 45569How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5193Glimmer Score:
Start: 5382914Stop: 5382021
Length: 894
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5193 translation of PA5193Homolog Bit Score 589.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3972 (ORF: BLASTX 439.0), t_PA5193 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCCATTCAGATCAGAGCCAGCGTTTCCTTTTCGACGATACCGACGTGCGCGGCGAGATGGTCGATCTC
GAGCGTAGCTACAGCGAAGTGCTGGCCAAACATCCCTATCCGGAACCGGTCGCGCAACTGCTCGGGGAGATG
CTCGCGGCGGCCTCGCTGCTCTGCGGCACGCTCAAGTTCGACGGCCTGCTGGTATTGCAGGCGCGCTCCAGC
GGCGCGGTGCCGCTGTTGATGGTGGAGTGTTCCAGCGACCGCCAGGTGCGTGGCCTGGCCCGCTATTCGGCG
GAGTCCATCGGCGCCGACGCCGGCATGCAGGAACTGATGCCCGAAGGCGTGCTGACCCTCACCGTGGACCCG
GTCAAGGGCCAGCGCTACCAGGGGATCGTCGCCCTGGAGGGGGTGAACCTGGCGGAATGCCTGTCCAACTAC
TTCGCCAGCTCGGAACAGCTGCCGACCCGTTTCTGGCTCAACGCCAACGGCCGCCGCGCCCGCGGCCTGCTG
CTGCAGCAGCTTCCCGCCGACCGCCTGAAGGACCCCGAGGCCCGCGAGGCCAGTTGGCAGCACCTGACCACC
CTGGCCGACACGCTGACCGCCGAAGAGCTGCTGGCGCTGGACAACGAGACCGTCCTGCACCGCCTCTACCAC
GAGGAAACCGTGCGCCTGTTCGAGCCGCAACCGCTGGTCTTCCATTGCAGTTGCTCGCGGGAACGTTCGGCC
AACGCCCTGGTCAGTCTCGGGCAGGCCGACTGCGAGCGGCTGCTCGAGGAGGAAGAAGGCTCGATCACCATC
GACTGCCAGTTCTGCAACCAGCGCTACCTGTTCGACGCCTCCGACGTCGCCCAGTTGTTCGCTGGCGCTGGC
AGCCAGGGGCCTTCCGAGACCCGCCACTGA