ViewGene

Locus Name:
GeneID:
Location:

GeneID:2566
TrivialName: PA14_20180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20180
PAO1 Ortholog Locus:PA3394
Sequence Length:915
Protein Length:304
Start: 1739074
Stop: 1738160
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06782.1|AE004760_10 (AE004760) NosF protein [Pseudomonas aeruginosa PAO1]
Identities = 301/304 (99%), Positives = 302/304 (99%)
Sequence:
ATGAGCCTGGTCGAGATCGACGGCGCGACCCTGCGCTACGGCGCCCTCACCGCCCTGAGCGGGCTCGACCTG
CGCCTGGAGCCCGGCGAGGTGCTCGGCCTGCTCGGCCACAACGGCGCCGGCAAGACCACCACCATCAAGCTG
GTCCTCGGCCTGCTGGCCCCCAGCGAAGGCCGCGTGCGGGTCCTCGGCCACGATGCGAGGAGCCTGGAGGCG
CGCCGCCAGCTCGGCTACCTGCCGGAGAACGTGACCTTCTACCCGCAGCTCAGCGGCGCCGAGACCCTGCGC
CACTTCGCCCGCCTCAAGGGCGTGGCGCCGGCCGAAGCCGCGCGCCTGCTGGAACAGGTCGGCCTCGGCCAT
GCCGCCAGGCGGCGCCTGAAAACCTACTCGAAAGGCATGCGCCAGCGCCTCGGCCTGGCCCAGGCGCTGCTC
GGCGAACCGCGCCTGCTGCTGCTCGACGAACCGACGGTGGGCCTCGACCCGCTGGCCACCGTCGAGCTTTAC
CAATTGCTCGACCGCCTGCGCGGCCAGGGCACCGGGATCGTCCTCTGCTCCCATGTGCTACCCGGCGTCGAG
ACGCACATCGACCGCGCCGCGATTCTCGCCGGCGGCCGCCTGCAAGTGGCCGGCAGCCTCGCCGAACTGCGC
CGCAAGGCGGCTCTGCCGACCCGCGTGCGCCTGGCCAGCCCGCATAACCCGCAGTGGCTCGAACGCTGGCAC
CGGGCCGGCCTGGCGGCGCGGAGACTGGACGGCCAGCGCATCGAGGTACTGCTGGACGATGCCGAGCGCGAC
GGCGTGCTGGAAGCGCTGCTGGCCGCGCGCGAGTTCGAGCTGGAGATCCTGCCGCCGTCGCTGGAGGACCTC
TATCGCCACCACATGTCCCCCGCCCCCACCGGAGCCACGCCATGCCCGTAG
Translation:
MSLVEIDGATLRYGALTALSGLDLRLEPGEVLGLLGHNGAGKTTTIKLVLGLLAPSEGRVRVLGHDARSLEA
RRQLGYLPENVTFYPQLSGAETLRHFARLKGVAPAEAARLLEQVGLGHAARRRLKTYSKGMRQRLGLAQALL
GEPRLLLLDEPTVGLDPLATVELYQLLDRLRGQGTGIVLCSHVLPGVETHIDRAAILAGGRLQVAGSLAELR
RKAALPTRVRLASPHNPQWLERWHRAGLAARRLDGQRIEVLLDDAERDGVLEALLAAREFELEILPPSLEDL
YRHHMSPAPTGATPCP*
AnnotationID:2574GeneID:2566
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 09:09:58
Gene Name:nosF
Confidence Code:2
GeneProduct:ATP/GTP binding protein NosF"
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1131,COG4152,COG1121,COG4555
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAA37716.1| (X53676) ATP-binding protein, peripheral [Pseudomonas stutzeri]
          Length = 308

 Score =  360 bits (925), Expect = 4e-99
 Identities = 192/298 (64%), Positives = 226/298 (75%), Gaps = 2/298 (0%)

>gb|AAD09159.1| (AF047429) putative ATP/GTP binding protein NosF [Achromobacter
           cycloclastes]
          Length = 299

 Score =  245 bits (626), Expect = 2e-64
 Identities = 145/292 (49%), Positives = 181/292 (61%), Gaps = 12/292 (4%)
Structural Features:
COG1131, CcmA, ABC-type multidrug transport system, ATPase component 
[Defense mechanisms]
CD-Length = 293 residues,  98.3% aligned
Score =  234 bits (599), Expect = 8e-63
Identities = 111/299 (37%), Positives = 167/299 (55%), Gaps = 19/299 (6%)

COG4152, ABC-type uncharacterized transport system, ATPase component
CD-Length = 300 residues,  96.7% aligned
Score =  188 bits (479), Expect = 7e-49
Identities = 93/300 (31%), Positives = 158/300 (52%), Gaps = 23/300 (7%)

COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
CD-Length = 254 residues,  84.3% aligned
Score =  166 bits (421), Expect = 4e-42
Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 10/214 (4%)

COG4555, NatA, ABC-type Na+ transport system, ATPase component 
[Energy production and conversion / Inorganic ion transport and metabolism]
CD-Length = 245 residues,  91.4% aligned
Score =  160 bits (406), Expect = 2e-40
Identities = 75/224 (33%), Positives = 125/224 (55%), Gaps = 7/224 (3%)
Genomic Context:
Comment:
ReferenceID:5135
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22280
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32169
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2566_cdd.html
URL:
ReferenceID:34053
Author/Investigator(s): Velasco L, Mesa S, Xu CA, Delgado MJ, Bedmar EJ.
Title: Molecular characterization of nosRZDFYLX genes coding for denitrifying nitrous oxide reductase of Bradyrhizobium japonicum.
PubMed: 15028871
MedLine:
Source:
Antonie Van Leeuwenhoek. 2004 Apr;85(3):229-35.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15028871
ReferenceID:34054
Author/Investigator(s): Honisch U, Zumft WG.
Title: Operon structure and regulation of the nos gene region of Pseudomonas stutzeri, encoding an ABC-Type ATPase for maturation of nitrous oxide reductase.
PubMed: 12618453
MedLine:
Source:
J Bacteriol. 2003 Mar;185(6):1895-902.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12618453
ReferenceID:34055
Author/Investigator(s): Zumft WG, Viebrock-Sambale A, Braun C.
Title: Nitrous oxide reductase from denitrifying Pseudomonas stutzeri. Genes for copper-processing and properties of the deduced products, including a new member of the family of ATP/GTP-binding proteins.
PubMed: 2170125
MedLine:
Source:
Eur J Biochem. 1990 Sep 24;192(3):591-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2170125
ReferenceID:34056
Author/Investigator(s): Inatomi K.
Title: Analysis of the nitrous oxide reduction genes, nosZDFYL, of Achromobacter cycloclastes.
PubMed: 10048486
MedLine:
Source:
DNA Res. 1998 Dec 31;5(6):365-71.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10048486
Homologs By Global Alignment
Gene ID:2566

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
125498 gb|AAG06782.1|AE004760_10 (AE004760) NosF protein [Pseudomonas aeruginosa PAO1] 304 99.01 99.34 0 1523.0
4264 PA3394_tr translation of PA3394 304 98.68 99.34 0 1519.0
125500 emb|CAA37716.1| (X53676) ATP-binding protein, peripheral [Pseudomonas stutzeri] 310 62.25 73.22 8 919.0
125499 dbj|BAC00876.1| (AB054991) NosF [Pseudomonas sp. MT-1] 311 61.73 72.99 10 921.0
125501 gb|AAG34388.1|AF197468_4 (AF197468) ATP/GTP binding protein; NosF [Pseudomonas fluorescens] 306 61.43 71.24 3 908.0
GC ORFID: 45568How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3394Glimmer Score:
Start: 3214858Stop: 3215772
Length: 915
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3394 translation of PA3394Homolog Bit Score 589.0
Other Homologs: t_PA3394 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCTGGTCGAGATCGACGGCGCGACCCTGCGCTACGGCGCCCTCACCGCCCTGAGCGGGCTCGACCTG
CGCCTGGAGCCCGGCGAGGTGCTCGGCCTGCTCGGCCACAACGGCGCCGGCAAGACCACCACCATCAAGCTG
GTCCTCGGCCTGCTGGCCCCCAGCGAAGGCCGCGTGCGGGTCCTCGGCCACGATGCGAGGAGCCTGGAGGCG
CGCCGCCAGCTCGGCTACCTGCCGGAGAACGTGACCTTCTACCCGCAGCTCAGCGGCGCCGAGACCCTGCGC
CACTTCGCCCGCCTCAAGGGCGTGGCGCCGGCCGAAGCCGCGCGCCTGCTGGAACAGGTCGGCCTCGGCCAT
GCCGCCAGGCGGCGCCTGAAAACCTACTCGAAAGGCATGCGCCAGCGCCTCGGCCTGGCCCAGGCGCTGCTC
GGCGAACCGCGCCTGCTGCTGCTCGACGAACCGACGGTGGGCCTCGACCCGCTGGCCACCGTCGAGCTTTAC
CAATTGCTCGACCGCCTGCGCGGCCAGGGCACCGGGATCGTCCTCTGCTCCCATGTGCTACCCGGCGTCGAG
ACGCACATCGACCGCGCCGCGATTCTCGCCGGCGGCCGCCTGCAAGTGGCCGGCAGCCTCGCCGAACTGCGC
CGCAAGGCGGCTCTGCCGACCCGCGTGCGCCTGGCCAGCCCGCATAACCCGCAGTGGCTCGAACGCTGGCAC
CGGGCCGGCCTGGCGGCGCGGAGACTGGACGGCCAGCGCATCGAGGTACTGCTGGACGATGCCGAGCGCGAC
GGCGTGCTGGAAGCGCTGCTGGCCGCGCGCGAGTTCGAGCTGGAGATCCTGCCGCCGTCGCTGGAGGACCTC
TATCGCCACCACATGTCCCCCGCCCCCACCGGAGCCACGCCATGCCCGTAG