ViewGene
Locus Name:
GeneID:
Location:

GeneID:2565
TrivialName: PA14_24970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24970
PAO1 Ortholog Locus:PA3023
Sequence Length:909
Protein Length:302
Start: 2183161
Stop: 2184069
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06411.1|AE004727_7 (AE004727) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 300/302 (99%), Positives = 301/302 (99%)
Sequence:
ATGGACAAGGACAAGGTTCTGCTGGTCCTGCATGGCAAGCAGGCGGGCAACGAAGAGGTTCGTGCCGCGGTC
GCGGCGCAGCGCGAGGCCGGGCGGGAGCTGGCGGTGCGGGTAACCTGGGAGGACGGCGACGCCCGGCGCATC
GTCGAGGAGGCGCTGGCGGCCGGCTTTGCGACGCTGGTCGCCGGCGGTGGCGACGGCACGCTGCGCGAGGTG
GCCGAAGCGCTGGCGCGCGGGCGAGGCGAGGCGAGCCTGGCGATCCTGCCGCTGGGCACCGCCAACGATTTC
GCCCGCGCCGCCGGGATTCCCCTGGAGCCGGCCGCGGCGCTGGCGCTGCTCGACCAGACGGCGCGGCCGATC
GACCTGGGCGCGGTGAACGGCAAGCTGTTCCTCAACATGGCCACTGGCGGCTTCGGTTCGAAGGTCACGGCG
AATACCTCGGAGGACCTGAAGAAGGTTCTCGGCGGTGCCGCCTACCTGTTGACCGGGTTGACCCGTTTTTCC
GAAGTGCATGCCGCCCAGGGCCGTTTCAGCGCCCCGGACTTCCAGTGGGAAGGCGAGTTCCTCGCCCTGGGC
ATCGGTAACGGGCGCCAGGCCGGCGGCGGGCACGTACTGTGTCCGCAAGCGCGAGTGGACGACGGCCTGCTG
GACGTGAGCATCCTGCCGACGCCGCAGGACATGGTCGGTACCCTGGGCACCCTGCTCGGCGGTGGCAACGGA
GTGGAAAGCCTGTTCGTCCGCGCGCGGGTGCCATGGCTGGAAGTGGAGGCGGCGGAAGGTCTCGACGTCAAT
CTCGACGGCGAGCCGCTGGAAGGACGCAAGCTGCGTTTCTCGGTTTCCCCGGGCGCGCTGCGCGTGCACTTG
CCGGCCGGTTCGCCGTTGTTGCGCGAGCCGCCGCGCGAGGACTGA
Translation:
MDKDKVLLVLHGKQAGNEEVRAAVAAQREAGRELAVRVTWEDGDARRIVEEALAAGFATLVAGGGDGTLREV
AEALARGRGEASLAILPLGTANDFARAAGIPLEPAAALALLDQTARPIDLGAVNGKLFLNMATGGFGSKVTA
NTSEDLKKVLGGAAYLLTGLTRFSEVHAAQGRFSAPDFQWEGEFLALGIGNGRQAGGGHVLCPQARVDDGLL
DVSILPTPQDMVGTLGTLLGGGNGVESLFVRARVPWLEVEAAEGLDVNLDGEPLEGRKLRFSVSPGALRVHL
PAGSPLLREPPRED*
AnnotationID:2573GeneID:2565
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 20:08:31
Gene Name:
Confidence Code:3
GeneProduct:putative diacylglycerol kinase
Cell Localization:()
Synonyms:yegS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1597
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC92107.1| (AJ414154) putative diacylglycerol kinase [Yersinia pestis CO92]
          Length = 296

 Score =  254 bits (650), Expect = 3e-67
 Identities = 137/293 (46%), Positives = 179/293 (61%), Gaps = 6/293 (2%)

>gb|AAN81070.1|AE016763_29 (AE016763) Hypothetical protein yegS [Escherichia coli CFT073]
          Length = 299

 Score =  239 bits (610), Expect = 1e-62
 Identities = 133/295 (45%), Positives = 179/295 (60%), Gaps = 8/295 (2%)






 
Structural Features:
COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic 
diacylglycerol kinase 
[Lipid metabolism]
CD-Length = 301 residues,  99.3% aligned
Score =  230 bits (588), Expect = 1e-61
Identities = 123/300 (41%), Positives = 156/300 (52%), Gaps = 6/300 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5133




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22278




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36026




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2565_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2565
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4263
                           PA3023_tr
                           translation of PA3023
                           302
                           99.33
                           99.66
                           0
                           1519.0
     

     
     
125480
                           gb|AAG06411.1|AE004727_7
                           (AE004727) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           302
                           99.33
                           99.66
                           0
                           1519.0
     

     
     
125481
                           gb|AAO57002.1|
                           (AE016868) conserved hypothetical protein TIGR00147 [Pseudomonas syringae pv. tomato str. DC3000]
                           305
                           67.21
                           80.98
                           3
                           1066.0
     

     
     
125482
                           gb|AAN67738.1|AE016405_1
                           (AE016782) conserved hypothetical protein TIGR00147 [Pseudomonas putida KT2440]
                           355
                           56.05
                           67.32
                           60
                           1019.0
     

     
     
125483
                           gb|AAM35366.1|
                           (AE011674) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           314
                           50.95
                           65.92
                           17
                           761.0
     

     






      

          
GC ORFID: 45567How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3023Glimmer Score: 

          
Start: 2770766Stop: 2769858

          
Length: 909


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3023 translation of PA3023Homolog Bit Score 589.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8033 (ORF: BLASTX 139.0), t_PA3023 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAAGGACAAGGTTCTGCTGGTCCTGCATGGCAAGCAGGCGGGCAACGAAGAGGTTCGTGCCGCGGTC 
GCGGCGCAGCGCGAGGCCGGGCGGGAGCTGGCGGTGCGGGTAACCTGGGAGGACGGCGACGCCCGGCGCATC 
GTCGAGGAGGCGCTGGCGGCCGGCTTTGCGACGCTGGTCGCCGGCGGTGGCGACGGCACGCTGCGCGAGGTG 
GCCGAAGCGCTGGCGCGCGGGCGAGGCGAGGCGAGCCTGGCGATCCTGCCGCTGGGCACCGCCAACGATTTC 
GCCCGCGCCGCCGGGATTCCCCTGGAGCCGGCCGCGGCGCTGGCGCTGCTCGACCAGACGGCGCGGCCGATC 
GACCTGGGCGCGGTGAACGGCAAGCTGTTCCTCAACATGGCCACTGGCGGCTTCGGTTCGAAGGTCACGGCG 
AATACCTCGGAGGACCTGAAGAAGGTTCTCGGCGGTGCCGCCTACCTGTTGACCGGGTTGACCCGTTTTTCC 
GAAGTGCATGCCGCCCAGGGCCGTTTCAGCGCCCCGGACTTCCAGTGGGAAGGCGAGTTCCTCGCCCTGGGC 
ATCGGTAACGGGCGCCAGGCCGGCGGCGGGCACGTACTGTGTCCGCAAGCGCGAGTGGACGACGGCCTGCTG 
GACGTGAGCATCCTGCCGACGCCGCAGGACATGGTCGGTACCCTGGGCACCCTGCTCGGCGGTGGCAACGGA 
GTGGAAAGCCTGTTCGTCCGCGCGCGGGTGCCATGGCTGGAAGTGGAGGCGGCGGAAGGTCTCGACGTCAAT 
CTCGACGGCGAGCCGCTGGAAGGACGCAAGCTGCGTTTCTCGGTTTCCCCGGGCGCGCTGCGCGTGCACTTG 
CCGGCCGGTTCGCCGTTGTTGCGCGAGCCGCCGCGCGAGGACTGA