ViewGene
Locus Name:
GeneID:
Location:

GeneID:2564
TrivialName: PA14_26350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26350
PAO1 Ortholog Locus:PA2915
Sequence Length:867
Protein Length:288
Start: 2297665
Stop: 2298531
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06303.1|AE004717_9 (AE004717) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 287/288 (99%), Positives = 287/288 (99%)
Sequence:
ATGTTGAAACCCGACATCACTGCCTTCTTCGACCCGGCCACCTCCACCTACAGCTACGTGGTGCGCGACCCG
TCCAGCCGCGCCTGCGCCATCGTCGACCCGGTGCTCGACTACGACCCGGCCGCCGGGCGCACCAGCCATGCC
AGCGCCGAACGCCTGATCGCCCATGTTCGCCAGCACGACCTGCAGGTGGAATGGCTGCTGGAGACCCACGTG
CACGCCGACCACCTGTCGGCGGCCATCTTCCTGCAGCGCGAACTGGGCGGGCGCCTGGCCATCGGCGCGCGA
ATCACCCAGGTGCAGGCGAAATTCTCCGGCCTGTTCAACCTGGGCGAGGCGTTCCCGGTGGACGGCCGCCAG
TTCGAACACCTGTTCGAGGACGGCGAGTCGTTCCGCATCGGCGCCCTGGAATGCCGCGCGCTGCATACCCCG
GGGCATACCCCGGCGTGCATGACCTACCTGGTCGGCGACAGCGCCTTCGTCGGCGATACCCTGTTCATGCCC
GACTACGGCACCGCCCGCTGCGATTTCCCCGGCGGCGACGCGCGCCAGCTGTATCGCTCGATCCAGCGCCTG
TTCGCGCTACCCGACGCGACCCGCCTGTTCATGTGCCACGACTACACGGCTCCCGGCCGCGACGAGCACCGC
TGCGAAACCAGCGTCGGCGAGCAGCGCCGGCACAACGTGCACGTCCGCGAAGGCGTCGACGAGGAGGCGTTC
GTCGCCATGCGCCAGCAGCGCGATGCCACCCTCGGCATGCCGACCCTGATGCTGCCGGCGATCCAGGTCAAC
ATGCGCGGCGGCAACCTGCCGCCGGTGGAAGGCAACGGGGTGCGTTACCTGAAGATCCCGCTGGATCTGTTC
TGA
Translation:
MLKPDITAFFDPATSTYSYVVRDPSSRACAIVDPVLDYDPAAGRTSHASAERLIAHVRQHDLQVEWLLETHV
HADHLSAAIFLQRELGGRLAIGARITQVQAKFSGLFNLGEAFPVDGRQFEHLFEDGESFRIGALECRALHTP
GHTPACMTYLVGDSAFVGDTLFMPDYGTARCDFPGGDARQLYRSIQRLFALPDATRLFMCHDYTAPGRDEHR
CETSVGEQRRHNVHVREGVDEEAFVAMRQQRDATLGMPTLMLPAIQVNMRGGNLPPVEGNGVRYLKIPLDLF
*
AnnotationID:2572GeneID:2564
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 07:07:49
Gene Name:
Confidence Code:3
GeneProduct:putative metallo-beta-lactamase family protein
Cell Localization:()
Synonyms:PA2915
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65686.1|AE016195_7 (AE016774) metallo-beta-lactamase family protein [Pseudomonas
           putida KT2440]
          Length = 294

 Score =  369 bits (947), Expect = e-101
 Identities = 180/285 (63%), Positives = 215/285 (75%), Gaps = 5/285 (1%)

>emb|CAD86483.1| (BX321865) Metallo-beta-lactamase superfamily [Nitrosomonas
           europaea ATCC 19718]
          Length = 287

 Score =  354 bits (909), Expect = 3e-97
 Identities = 171/287 (59%), Positives = 216/287 (75%), Gaps = 2/287 (0%)

>emb|CAE30721.1| (BX640437) metallo-beta-lactamase superfamily protein [Bordetella
           bronchiseptica]
          Length = 289

 Score =  354 bits (908), Expect = 4e-97
 Identities = 178/285 (62%), Positives = 211/285 (74%), Gaps = 6/285 (2%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5131




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22276




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36136




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2564_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2564
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4262
                           PA2915_tr
                           translation of PA2915
                           288
                           99.65
                           99.65
                           0
                           1518.0
     

     
     
125457
                           gb|AAG06303.1|AE004717_9
                           (AE004717) hypothetical protein PA2915 [Pseudomonas aeruginosa PAO1]
                           288
                           99.65
                           99.65
                           0
                           1518.0
     

     
     
125462
                           emb|CAD15246.1|
                           (AL646065) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           288
                           62.15
                           73.26
                           2
                           928.0
     

     
     
125458
                           gb|AAN65686.1|AE016195_7
                           (AE016774) metallo-beta-lactamase family protein [Pseudomonas putida KT2440]
                           297
                           61.27
                           72.72
                           12
                           943.0
     

     
     
125460
                           gb|AAQ57722.1|
                           (AE016910) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           288
                           61.11
                           74.65
                           2
                           929.0
     

     






      

          
GC ORFID: 45566How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2915Glimmer Score: 

          
Start: 2656260Stop: 2655394

          
Length: 867


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2915 translation of PA2915Homolog Bit Score 589.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3012 (ORF: BLASTX 340.0), t_PA2915 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGAAACCCGACATCACTGCCTTCTTCGACCCGGCCACCTCCACCTACAGCTACGTGGTGCGCGACCCG 
TCCAGCCGCGCCTGCGCCATCGTCGACCCGGTGCTCGACTACGACCCGGCCGCCGGGCGCACCAGCCATGCC 
AGCGCCGAACGCCTGATCGCCCATGTTCGCCAGCACGACCTGCAGGTGGAATGGCTGCTGGAGACCCACGTG 
CACGCCGACCACCTGTCGGCGGCCATCTTCCTGCAGCGCGAACTGGGCGGGCGCCTGGCCATCGGCGCGCGA 
ATCACCCAGGTGCAGGCGAAATTCTCCGGCCTGTTCAACCTGGGCGAGGCGTTCCCGGTGGACGGCCGCCAG 
TTCGAACACCTGTTCGAGGACGGCGAGTCGTTCCGCATCGGCGCCCTGGAATGCCGCGCGCTGCATACCCCG 
GGGCATACCCCGGCGTGCATGACCTACCTGGTCGGCGACAGCGCCTTCGTCGGCGATACCCTGTTCATGCCC 
GACTACGGCACCGCCCGCTGCGATTTCCCCGGCGGCGACGCGCGCCAGCTGTATCGCTCGATCCAGCGCCTG 
TTCGCGCTACCCGACGCGACCCGCCTGTTCATGTGCCACGACTACACGGCTCCCGGCCGCGACGAGCACCGC 
TGCGAAACCAGCGTCGGCGAGCAGCGCCGGCACAACGTGCACGTCCGCGAAGGCGTCGACGAGGAGGCGTTC 
GTCGCCATGCGCCAGCAGCGCGATGCCACCCTCGGCATGCCGACCCTGATGCTGCCGGCGATCCAGGTCAAC 
ATGCGCGGCGGCAACCTGCCGCCGGTGGAAGGCAACGGGGTGCGTTACCTGAAGATCCCGCTGGATCTGTTC 
TGA