ViewGene
Locus Name:
GeneID:
Location:

GeneID:2563
TrivialName: PA14_33060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33060
PAO1 Ortholog Locus:PA2440
Sequence Length:972
Protein Length:323
Start: 2894922
Stop: 2893951
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05828.1|AE004671_4 (AE004671) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 293/323 (90%), Positives = 298/323 (92%), Gaps = 3/323 (0%)
Sequence:
ATGCGAAGCCTGATCGGGATGACGTTCCTGAACTCCTCCGTGGGCCAGCGCCGGCTGCGCCAGAACGGCATC
GTGCTGCGCCTGGGACGGGTAGTCGCGGATCGCCGGCGCGCGGCCCTGCCGCACCGGCAAGGGCGCTGCCTC
GACCGCCAGGGCCTGGAGACCCTGCTGCTGTGGCTACAGCGGCACTTCCTCTGCGTGCCCCTGGAACACCTG
CTCGAGAGCCCCGCTCCAGCCTGCTTGCGGATCGCCCTGAGCGTCGACGGCAACCCTGCGGAACTGGCCGAG
CTGGTCTACCCGCTGCTGGAGCGCTACGAAATGCCAGCGAGCGCCTTCATCGGCGGCGACCCGCGCAGTTGG
CGCGAAGCGGTCGCCGACACCCTCTGGCAGGCCGATGCGGCTACCGCCGAGCCATTGCTGGAACTGCTGGAG
CGTTACGGCGGCGCTGCGCTCATGCGGGTGCTCGAACGCACCGGCGACGACCAGCGTCGCAGCCGTAGCCTC
GACCTCCTCCTGCGCAAGCTGGAACGCCTCGACCCGGCTTCGCAGCAGGCCTTGCGCGCGGCCTGCACGGCC
CCCGCGGCGTACGGCGCGGGCGATTGGGAACGGGTCCGCCGCCTAGAAAACAGCGGCCTGGTTCGCTTCGGC
CTGCACGGCCAGGACCCGCACCCAGCGACAGGCCTTTGCGCCGAGGACTGTCTCGGCCGCGCCCACCGCCAG
CTCCAGCAGCATTGCGCCGCCCCTCTGCCGGTGTTCTGCCAAGCTCGCGCCACGCCCGCCGCGACGCCTGCG
CAACCCGGCCTGCGCGCCGCCCTCGGCCGGCTTGGCTACCGCTTCGCCTTCGGCGCGCGCAATGGCCTGGTG
GATACCCGTTGCGACCCGCTGGACCTGCCGCGCATCGAGGTGGACGCGGCGATCGCCGCCCGTCCCGGCCGG
CTGGCCTGGCGCATCTATCGTGGAGCCCGTCCATGA
Translation:
MRSLIGMTFLNSSVGQRRLRQNGIVLRLGRVVADRRRAALPHRQGRCLDRQGLETLLLWLQRHFLCVPLEHL
LESPAPACLRIALSVDGNPAELAELVYPLLERYEMPASAFIGGDPRSWREAVADTLWQADAATAEPLLELLE
RYGGAALMRVLERTGDDQRRSRSLDLLLRKLERLDPASQQALRAACTAPAAYGAGDWERVRRLENSGLVRFG
LHGQDPHPATGLCAEDCLGRAHRQLQQHCAAPLPVFCQARATPAATPAQPGLRAALGRLGYRFAFGARNGLV
DTRCDPLDLPRIEVDAAIAARPGRLAWRIYRGARP*
AnnotationID:2571GeneID:2563
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:40
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2440
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5129




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22274




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2563
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4261
                           PA2440_tr
                           translation of PA2440
                           323
                           90.71
                           92.26
                           3
                           1521.0
     

     
     
125456
                           gb|AAG05828.1|AE004671_4
                           (AE004671) hypothetical protein PA2440 [Pseudomonas aeruginosa PAO1]
                           323
                           90.71
                           92.26
                           3
                           1521.0
     

     






      

          
GC ORFID: 45565How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2440Glimmer Score: 

          
Start: 2058994Stop: 2059965

          
Length: 972


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2440 translation of PA2440Homolog Bit Score 589.0

          
Other Homologs:  t_PA2440 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGAAGCCTGATCGGGATGACGTTCCTGAACTCCTCCGTGGGCCAGCGCCGGCTGCGCCAGAACGGCATC 
GTGCTGCGCCTGGGACGGGTAGTCGCGGATCGCCGGCGCGCGGCCCTGCCGCACCGGCAAGGGCGCTGCCTC 
GACCGCCAGGGCCTGGAGACCCTGCTGCTGTGGCTACAGCGGCACTTCCTCTGCGTGCCCCTGGAACACCTG 
CTCGAGAGCCCCGCTCCAGCCTGCTTGCGGATCGCCCTGAGCGTCGACGGCAACCCTGCGGAACTGGCCGAG 
CTGGTCTACCCGCTGCTGGAGCGCTACGAAATGCCAGCGAGCGCCTTCATCGGCGGCGACCCGCGCAGTTGG 
CGCGAAGCGGTCGCCGACACCCTCTGGCAGGCCGATGCGGCTACCGCCGAGCCATTGCTGGAACTGCTGGAG 
CGTTACGGCGGCGCTGCGCTCATGCGGGTGCTCGAACGCACCGGCGACGACCAGCGTCGCAGCCGTAGCCTC 
GACCTCCTCCTGCGCAAGCTGGAACGCCTCGACCCGGCTTCGCAGCAGGCCTTGCGCGCGGCCTGCACGGCC 
CCCGCGGCGTACGGCGCGGGCGATTGGGAACGGGTCCGCCGCCTAGAAAACAGCGGCCTGGTTCGCTTCGGC 
CTGCACGGCCAGGACCCGCACCCAGCGACAGGCCTTTGCGCCGAGGACTGTCTCGGCCGCGCCCACCGCCAG 
CTCCAGCAGCATTGCGCCGCCCCTCTGCCGGTGTTCTGCCAAGCTCGCGCCACGCCCGCCGCGACGCCTGCG 
CAACCCGGCCTGCGCGCCGCCCTCGGCCGGCTTGGCTACCGCTTCGCCTTCGGCGCGCGCAATGGCCTGGTG 
GATACCCGTTGCGACCCGCTGGACCTGCCGCGCATCGAGGTGGACGCGGCGATCGCCGCCCGTCCCGGCCGG 
CTGGCCTGGCGCATCTATCGTGGAGCCCGTCCATGA