ViewGene
Locus Name:
GeneID:
Location:

GeneID:2562
TrivialName: PA14_02060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02060
PAO1 Ortholog Locus:PA0165
Sequence Length:837
Protein Length:278
Start: 187980
Stop: 188816
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03555.1|AE004454_7 (AE004454) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 278/278 (100%), Positives = 278/278 (100%)
Sequence:
ATGAGCCGCACACTCGCCACCGTGATGCTAGCCGGGGGGCTGCTGGCCGCAGGCCAGGCTGTCGCCGAAGAC
CATGACATGACGCCGACCCACGAGACCGACTCGGGGCCGCTGCTCTGGCACAACGAGAGCCTGACCTACCTC
TACGGCAAGAACTTCAAGATCAACCCGCCGATCCAGCAGACCTTCACCCTGGAACATGCCAGCGGCTGGACC
TGGGGCGACCTGTTCATCTTCTTCGACCAGATCAACTACAACGGCAAGGAAGACGCCAGCAACGGCAAGAAC
ACCTACTACGGCGAGATCACTCCGCGCCTGAGCTTCGGCAAGCTCACCGGAGCGGACCTCTCCTTCGGCCCG
GTGAAGGACGTGCTGCTGGCCGGCACTTACGAGTTCGGCGAAGGCGACACCGAGGCCTACCTGCTCGGCCCG
GGCTTCGACCTGGCGATCCCCGGCTTCGACTACTTCCAGCTCAACTTCTACTACCGCAAGCCCGACGGCAAC
CGCGTGCGCGCCGGCGCCTGGCAGATCACCCCGGTGTGGTCCTACACCATTCCGGTGGGCAACTCCGACATC
CTCATCGACGGCTACATGGACTGGGTGATCAACAACAAGAGCGCCAGCACCAGCCGCCGCAACCAGAGCGAC
TACCACGCCAACCTGCACTTCAACCCACAGGTCAAGTACGACCTGGGCAAGGCCCTCGGCTACGAGCCTAAG
CACCTGTACGTGGGCCTGGAGTACGACTACTGGTCCGACAAGTACGGTGTGAAGGACTCGCAGTACTTCACC
ACCGACCAGAACACCGCCAGCTTCCTGGTCAAGTACCACTTCTGA
Translation:
MSRTLATVMLAGGLLAAGQAVAEDHDMTPTHETDSGPLLWHNESLTYLYGKNFKINPPIQQTFTLEHASGWT
WGDLFIFFDQINYNGKEDASNGKNTYYGEITPRLSFGKLTGADLSFGPVKDVLLAGTYEFGEGDTEAYLLGP
GFDLAIPGFDYFQLNFYYRKPDGNRVRAGAWQITPVWSYTIPVGNSDILIDGYMDWVINNKSASTSRRNQSD
YHANLHFNPQVKYDLGKALGYEPKHLYVGLEYDYWSDKYGVKDSQYFTTDQNTASFLVKYHF*
AnnotationID:2570GeneID:2562
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 07:07:23
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein
Cell Localization:()
Synonyms:PA0165
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3248
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3248, Tsx, Nucleoside-binding outer membrane protein 
[Cell envelope biogenesis, outer membrane]
CD-Length = 284 residues, 100.0% aligned
Score =  345 bits (885), Expect = 4e-96
Identities = 89/287 (31%), Positives = 121/287 (42%), Gaps = 12/287 (4%)








   
Genomic Context:






   
Comment:


















    ReferenceID:5127




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22272




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33536




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2562_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2562
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4260
                           PA0165_tr
                           translation of PA0165
                           278
                           99.99
                           99.99
                           0
                           1521.0
     

     
     
125449
                           gb|AAG03555.1|AE004454_7
                           (AE004454) hypothetical protein PA0165 [Pseudomonas aeruginosa PAO1]
                           278
                           99.99
                           99.99
                           0
                           1521.0
     

     
     
125450
                           gb|AAN69873.1|AE016626_8
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           279
                           65.23
                           74.55
                           20
                           976.0
     

     
     
125452
                           gb|AAK50295.1|U66917_63
                           (U66917) hypothetical protein [Pseudomonas sp. ADP]
                           286
                           61.88
                           74.12
                           27
                           917.0
     

     
     
125451
                           gb|AAO57140.1|
                           (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           278
                           61.51
                           73.38
                           17
                           941.0
     

     






      

          
GC ORFID: 45564How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0165Glimmer Score: 

          
Start: 5989319Stop: 5990155

          
Length: 837


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0165 translation of PA0165Homolog Bit Score 590.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene592 (ORF: BLASTX 356.0), t_PA0165 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGCACACTCGCCACCGTGATGCTAGCCGGGGGGCTGCTGGCCGCAGGCCAGGCTGTCGCCGAAGAC 
CATGACATGACGCCGACCCACGAGACCGACTCGGGGCCGCTGCTCTGGCACAACGAGAGCCTGACCTACCTC 
TACGGCAAGAACTTCAAGATCAACCCGCCGATCCAGCAGACCTTCACCCTGGAACATGCCAGCGGCTGGACC 
TGGGGCGACCTGTTCATCTTCTTCGACCAGATCAACTACAACGGCAAGGAAGACGCCAGCAACGGCAAGAAC 
ACCTACTACGGCGAGATCACTCCGCGCCTGAGCTTCGGCAAGCTCACCGGAGCGGACCTCTCCTTCGGCCCG 
GTGAAGGACGTGCTGCTGGCCGGCACTTACGAGTTCGGCGAAGGCGACACCGAGGCCTACCTGCTCGGCCCG 
GGCTTCGACCTGGCGATCCCCGGCTTCGACTACTTCCAGCTCAACTTCTACTACCGCAAGCCCGACGGCAAC 
CGCGTGCGCGCCGGCGCCTGGCAGATCACCCCGGTGTGGTCCTACACCATTCCGGTGGGCAACTCCGACATC 
CTCATCGACGGCTACATGGACTGGGTGATCAACAACAAGAGCGCCAGCACCAGCCGCCGCAACCAGAGCGAC 
TACCACGCCAACCTGCACTTCAACCCACAGGTCAAGTACGACCTGGGCAAGGCCCTCGGCTACGAGCCTAAG 
CACCTGTACGTGGGCCTGGAGTACGACTACTGGTCCGACAAGTACGGTGTGAAGGACTCGCAGTACTTCACC 
ACCGACCAGAACACCGCCAGCTTCCTGGTCAAGTACCACTTCTGA