ViewGene
Locus Name:
GeneID:
Location:

GeneID:2561
TrivialName: PA14_68660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68660
PAO1 Ortholog Locus:PA5197
Sequence Length:906
Protein Length:301
Start: 6121353
Stop: 6122258
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08582.1|AE004932_9 (AE004932) ribosomal protein S6 modification protein [Pseudomonas aeruginosa PAO1]
Identities = 301/301 (100%), Positives = 301/301 (100%)
Sequence:
ATGAAAATCGCCGTGCTGTCGCGCAATCCCCGGCTCTACTCGACCCGTCGCCTGGTGGAGGCCGGGCGGGAG
CGCGGCCATGAAATGGTGGTCATCGATACGCTGCGCGCCTACATGAACATCGCCAGCCACAAGCCGCAGATC
CACTACCGGGGACAACCGCTGGAGGGCTTCGACGCGGTGATCCCGCGCATCGGCGCCTCGGTGACCTTCTAC
GGCTGCGCGGTATTGCGCCAGTTCGAGATGATGGGCGTGTTCCCGCTCAACGAGTCGGTCGCCATCGCTCGC
TCGCGGGACAAGCTGCGCTCGCTGCAACTGCTCTCGCGCAAGGGCATCGGCCTGCCGGTGACCGGCTTCGCC
CACTCCCCGGACGATGTCCCGGACCTGATCGAGATGGTCGGTGGCGCACCGCTGGTGATCAAGCTGCTGGAG
GGCACCCAGGGCATCGGCGTGGTCCTCTGCGAAACCGAGAAGGCCGCCGAATCGGTGCTCGAGGCTTTCATG
GGGCTCAAGCACAACATCATGGTCCAGGAGTACATAAAGGAAGCCGGCGGCGCCGACATCCGCTGCTTCGTG
GTCGGCGACAAGGTGATCGCCTCGATGAAGCGCCAGGCAGCGCCCGGCGAGTTCCGCTCCAACCTGCACCGC
GGCGGCAGCGCCAGCCTGATCAAGATCACCCCGGAAGAACGCATGACCGCCATCCGCGCCGCTCGCGTGATG
GGCCTGAACGTCGCCGGGGTGGATATCCTGCGCTCCAACCATGGTCCGCTGGTAATGGAGGTGAACTCCTCG
CCGGGCCTGGAAGGTATCGAATCCACCACCGGCAAGGACATCGCCGGGATCATCATCCAGTACCTGGAAAAG
AACGGCGGCCCCCACCTGGCCAGGACGAAGGGAAAGGGGTGA
Translation:
MKIAVLSRNPRLYSTRRLVEAGRERGHEMVVIDTLRAYMNIASHKPQIHYRGQPLEGFDAVIPRIGASVTFY
GCAVLRQFEMMGVFPLNESVAIARSRDKLRSLQLLSRKGIGLPVTGFAHSPDDVPDLIEMVGGAPLVIKLLE
GTQGIGVVLCETEKAAESVLEAFMGLKHNIMVQEYIKEAGGADIRCFVVGDKVIASMKRQAAPGEFRSNLHR
GGSASLIKITPEERMTAIRAARVMGLNVAGVDILRSNHGPLVMEVNSSPGLEGIESTTGKDIAGIIIQYLEK
NGGPHLARTKGKG*
AnnotationID:2569GeneID:2561
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 17:05:00
Gene Name:rimK
Confidence Code:2
GeneProduct:ribosomal protein S6 modification protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:glutathione synthase
Functional Category Confidence Code:5
COGs:COG0189
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53780.1| (AE016856) ribosomal protein S6 modification protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 301

 Score =  551 bits (1420), Expect = e-156
 Identities = 277/301 (92%), Positives = 291/301 (96%)

>gb|AAN65880.1|AE016216_1 (AE016775) ribosomal protein S6 modification protein [Pseudomonas
           putida KT2440]
          Length = 301

 Score =  545 bits (1405), Expect = e-155
 Identities = 273/301 (90%), Positives = 292/301 (97%)

>gb|AAF95425.1| (AE004299) ribosomal protein S6 modification protein [Vibrio
           cholerae]
          Length = 301

 Score =  471 bits (1212), Expect = e-132
 Identities = 233/301 (77%), Positives = 267/301 (88%)








 
Structural Features:
COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme 
(glutaminyl transferase) 
[Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
CD-Length = 318 residues,  98.7% aligned
Score =  250 bits (640), Expect = 1e-67
Identities = 111/315 (35%), Positives = 160/315 (50%), Gaps = 27/315 (8%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5125




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22270




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34877




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2561_cdd.html


    		




 
URL:

















    ReferenceID:35766




  
Author/Investigator(s):
        Kang WK, Icho T, Isono S, Kitakawa M, Isono K.





  
Title:
        Characterization of the gene rimK responsible for the addition of glutamic acid residues to the C-terminus of ribosomal protein S6 in Escherichia coli K12.




  
PubMed:
        2570347


MedLine:
        




    
Source:
Mol Gen Genet. 1989 Jun;217(2-3):281-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2570347









           
Homologs By Global Alignment 

           

       



     
Gene ID:2561
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4259
                           PA5197_tr
                           translation of PA5197
                           301
                           99.99
                           99.99
                           0
                           1521.0
     

     
     
125418
                           gb|AAG08582.1|AE004932_9
                           (AE004932) ribosomal protein S6 modification protein [Pseudomonas aeruginosa PAO1]
                           301
                           99.99
                           99.99
                           0
                           1521.0
     

     
     
125419
                           gb|AAO53780.1|
                           (AE016856) ribosomal protein S6 modification protein [Pseudomonas syringae pv. tomato str. DC3000]
                           301
                           92.02
                           96.67
                           0
                           1420.0
     

     
     
125420
                           gb|AAN65880.1|AE016216_1
                           (AE016775) ribosomal protein S6 modification protein [Pseudomonas putida KT2440]
                           301
                           90.69
                           97.00
                           0
                           1405.0
     

     
     
125421
                           gb|AAF95425.1|
                           (AE004299) ribosomal protein S6 modification protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           301
                           77.40
                           88.70
                           0
                           1212.0
     

     






      

          
GC ORFID: 45563How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5197Glimmer Score: 

          
Start: 5385039Stop: 5385944

          
Length: 906


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5197 translation of PA5197Homolog Bit Score 590.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3106 (ORF: BLASTX 550.0), t_PA5197 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAATCGCCGTGCTGTCGCGCAATCCCCGGCTCTACTCGACCCGTCGCCTGGTGGAGGCCGGGCGGGAG 
CGCGGCCATGAAATGGTGGTCATCGATACGCTGCGCGCCTACATGAACATCGCCAGCCACAAGCCGCAGATC 
CACTACCGGGGACAACCGCTGGAGGGCTTCGACGCGGTGATCCCGCGCATCGGCGCCTCGGTGACCTTCTAC 
GGCTGCGCGGTATTGCGCCAGTTCGAGATGATGGGCGTGTTCCCGCTCAACGAGTCGGTCGCCATCGCTCGC 
TCGCGGGACAAGCTGCGCTCGCTGCAACTGCTCTCGCGCAAGGGCATCGGCCTGCCGGTGACCGGCTTCGCC 
CACTCCCCGGACGATGTCCCGGACCTGATCGAGATGGTCGGTGGCGCACCGCTGGTGATCAAGCTGCTGGAG 
GGCACCCAGGGCATCGGCGTGGTCCTCTGCGAAACCGAGAAGGCCGCCGAATCGGTGCTCGAGGCTTTCATG 
GGGCTCAAGCACAACATCATGGTCCAGGAGTACATAAAGGAAGCCGGCGGCGCCGACATCCGCTGCTTCGTG 
GTCGGCGACAAGGTGATCGCCTCGATGAAGCGCCAGGCAGCGCCCGGCGAGTTCCGCTCCAACCTGCACCGC 
GGCGGCAGCGCCAGCCTGATCAAGATCACCCCGGAAGAACGCATGACCGCCATCCGCGCCGCTCGCGTGATG 
GGCCTGAACGTCGCCGGGGTGGATATCCTGCGCTCCAACCATGGTCCGCTGGTAATGGAGGTGAACTCCTCG 
CCGGGCCTGGAAGGTATCGAATCCACCACCGGCAAGGACATCGCCGGGATCATCATCCAGTACCTGGAAAAG 
AACGGCGGCCCCCACCTGGCCAGGACGAAGGGAAAGGGGTGA