ViewGene

Locus Name:
GeneID:
Location:

GeneID:256
TrivialName: PA14_23310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23310
PAO1 Ortholog Locus:PA3164
Sequence Length:2241
Protein Length:746
Start: 2020960
Stop: 2023200
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06552.1|AE004740_5 (AE004740) still frameshift 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE prephenate dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 741/746 (99%), Positives = 742/746 (99%)
Sequence:
ATGACTGAGGTCACGCCGCTGCAACAGTCGACCCCTAAGCTGGGCCGCCTGGTGGTGGTGGGGCTGGGCCTG
ATCGGCGGCTCCTTCGCCAAGGGGTTGCGGAGCAAAGGGTTGTTCCGCGAAGTGGTCGGCGTGGATCGGGAT
GCCGAGTCTTGCCGCCTGGCGGTGGAGCTCGGCGTGGTTGACCGTTGCGAGGAGGATCTTGGTCGCGCCTGC
GTCGGCGCCGACGTGATCCAGCTGGCGGTGCCGATCCTGGCGATGGAGCGGGTGCTGGCCGACCTGGCGAAG
CTCGACCTGGGCAAGGCTGTATTGACCGACGTTGGCAGCGCCAAGGGCAATATCGTGCGTGCCGCGCGTGCC
GCGTTCGGCGGGATGCCGCGGTACCTGGTACCGGGGCATCCGATCGCGGGTTCCGAGCAGAGCGGAGTGACC
GCGGCGAAGGCGACCCTGTTCCGCCGGCACAAGGTGATTCTCACGCCCTCCGCGGAGACCGATGCCGACGCG
CTGGCGCTGGTCGACAGCCTGTGGCGCGCGCTGGGCGCGGACGTCGAGCACATGGAGGTCGAGCATCACGAC
GAGGTTCTGGCGGCCACCAGCCACCTGCCTCACCTGCTGGCCTTCACCCTGGTCGACTCCCTGGCCAAGCGC
AGCGAGAACCTGGAGATCTTCCGCTATGCCGCCGGCGGTTTCCGTGATTTCACACGGATCGCCGGCAGCGAC
CCGGTGATGTGGCACGACATCTTTCTCGCCAATCGCGAGGCGGTGCTGCGTACACTGGATGTTTTTTGTGAC
GACCTCGACGCGCTGCGCGAGGCCGTCGACACTGGGGACGGGCACCAGTTGTTGGGCGTTTTCACGCGCGCC
CGGGTAGCCCGTGAGCATTTCAGCAAAATCCTGGCCCGTCGGGCCTATGTGGACGCCATGCACAACAACGAC
CTGATTTATCTGGCCCAGCCGGGCGGCAGCCTGTCCGGAACCATCCGGGTACCGGGCGACAAGTCGATCTCC
CATCGCTCGATCATGCTCGGCTCCCTGGCCGAAGGCACCACCGAAGTGGAGGGCTTCCTCGAGGGCGAGGAC
GCACTGGCAACCATCCAGGCGTTCCGCGACATGGGAGTGGTGATCGAGGGGCCGCAGAACGGCCGCGTCACC
GTCCATGGCGTTGGCCTGCACGGCCTCAAGGCGCCGCCTGGGCCGATCTACCTGGGTAACTCCGGTACTTCC
ATGCGTCTGCTCAGCGGTCTGCTGGCGGCCCAGCCGTTCGACAGCACCCTGACCGGCGACGTTTCCCTTTCC
AAGCGGCCGATGAATCGCGTAGCCAAGCCGTTGCGCGAGATGGGCGCGGTAATCGAGACGGGGCCGGAAGGC
CGTCCGCCGATGACCATTCGCGGCGGCCAGCGCCTCACCGGTATGCATTACGACATGCCGATGGCCAGCGCC
CAGGTGAAGTCCTGCCTGTTGCTCGCCGGGCTCTACGCCGCGGGTGAGACCTCGGTCACCGAGCCGGCGCCG
ACCCGCGACCACACCGAGCGCATGCTGCGCGGCTTCGGCTATCCGGTGGAGGTCGAGGGCAGCACCGCCAAG
GTCGAATCCGGGCACAAGTTGAGCGCCACCCATATCGAGGTCCCGGCCGACATTTCCTCGGCAGCCTTCTTC
CTGGTTGCCGCCAGTATCGCCGAGGGTTCGGAACTGGTCCTGCAGCACGTCGGCATCAACCCGACGCGCGTC
GGCGTCATCGAGATCCTGCGCCTGATGGGTGGTGACCTGAGCCTGGAAAATCAGCGCGAGGTCGGCGGCGAG
CCGGTCGCCGACATCCGCGTGCGCTCCGCGCGGCTCAAGGGCATCGACATTCCCGAGGACCTGGTGCCACTG
GCCATCGACGAGTTCCCGGTACTCTTCGTGGCTGCCGCCTGCGCCGAGGGGCGCACCGTCCTGCGTGGCGCC
GAAGAGCTGCGGGTCAAGGAGTCGGACCGTATCCAGGTCATGGCCGACGGCCTGAAGGCCCTGGGCGTGAAG
GCCGAGCCGACCCCGGATGGCATCGTCATCGAGGGTGGTGCGTTCGGTGGCGGCGAAGTCTGGGCGCACGGC
GACCACCGTATCGCCATGTCCTTCAGCGTCGCTTCGCTGCGCGCCAGCGGGCCGATCCGCATCCACGATTGC
GCCAACGTCGCCACCTCCTTCCCCAACTTCCTCGCCCTGTGTGCCCAGACCGGTATCCGGGTCGCCGTGGAG
AACAATTGA
Translation:
MTEVTPLQQSTPKLGRLVVVGLGLIGGSFAKGLRSKGLFREVVGVDRDAESCRLAVELGVVDRCEEDLGRAC
VGADVIQLAVPILAMERVLADLAKLDLGKAVLTDVGSAKGNIVRAARAAFGGMPRYLVPGHPIAGSEQSGVT
AAKATLFRRHKVILTPSAETDADALALVDSLWRALGADVEHMEVEHHDEVLAATSHLPHLLAFTLVDSLAKR
SENLEIFRYAAGGFRDFTRIAGSDPVMWHDIFLANREAVLRTLDVFCDDLDALREAVDTGDGHQLLGVFTRA
RVAREHFSKILARRAYVDAMHNNDLIYLAQPGGSLSGTIRVPGDKSISHRSIMLGSLAEGTTEVEGFLEGED
ALATIQAFRDMGVVIEGPQNGRVTVHGVGLHGLKAPPGPIYLGNSGTSMRLLSGLLAAQPFDSTLTGDVSLS
KRPMNRVAKPLREMGAVIETGPEGRPPMTIRGGQRLTGMHYDMPMASAQVKSCLLLAGLYAAGETSVTEPAP
TRDHTERMLRGFGYPVEVEGSTAKVESGHKLSATHIEVPADISSAAFFLVAASIAEGSELVLQHVGINPTRV
GVIEILRLMGGDLSLENQREVGGEPVADIRVRSARLKGIDIPEDLVPLAIDEFPVLFVAAACAEGRTVLRGA
EELRVKESDRIQVMADGLKALGVKAEPTPDGIVIEGGAFGGGEVWAHGDHRIAMSFSVASLRASGPIRIHDC
ANVATSFPNFLALCAQTGIRVAVENN*
AnnotationID:266GeneID:256
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:28
Gene Name:
Confidence Code:2
GeneProduct:still frameshift 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE prephenate dehydrogenase
Cell Localization:()
Synonyms:PA3164
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:3-phosphoshikimate 1-carboxyvinyltransferase
Functional Category Confidence Code:5
COGs:pfam00275,pfam02153,COG0128,COG0287
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67390.1|AE016365_5 (AE016780) prephenate dehydrogenase, putative/3-phosphoshikimate
           1-carboxyvinyltransferase [Pseudomonas putida KT2440]
          Length = 746

 Score = 1206 bits (3121), Expect = 0.0
 Identities = 616/734 (83%), Positives = 661/734 (90%), Gaps = 2/734 (0%)

>gb|AAD47362.2|AF038578_5 (AF038578) cyclohexadienyl dehydrogenase/5-enolpyruvylshikmate 3-P
           synthase [Pseudomonas stutzeri]
          Length = 505

 Score =  793 bits (2048), Expect = 0.0
 Identities = 403/501 (80%), Positives = 439/501 (87%)

>gb|AAM36518.1| (AE011797) 3-phosphoshikimate 1-carboxyvinyltransferase
           [Xanthomonas axonopodis pv. citri str. 306]
          Length = 440

 Score =  476 bits (1226), Expect = e-133
 Identities = 240/424 (56%), Positives = 306/424 (72%)
Structural Features:
pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase).
CD-Length = 416 residues,  98.8% aligned
Score =  354 bits (910), Expect = 2e-98
Identities = 152/421 (36%), Positives = 229/421 (54%), Gaps = 18/421 (4%)

pfam02153, PDH, Prephenate dehydrogenase.
CD-Length = 272 residues, 100.0% aligned
Score =  241 bits (617), Expect = 2e-64
Identities = 121/275 (44%), Positives = 158/275 (57%), Gaps = 4/275 (1%)

COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase
[Amino acid transport and metabolism]
CD-Length = 428 residues,  99.3% aligned
Score =  457 bits (1177), Expect = 3e-129
Identities = 198/438 (45%), Positives = 260/438 (59%), Gaps = 23/438 (5%)

COG0287, TyrA, Prephenate dehydrogenase 
[Amino acid transport and metabolism]
CD-Length = 279 residues, 100.0% aligned
Score =  256 bits (655), Expect = 6e-69
Identities = 119/286 (41%), Positives = 167/286 (58%), Gaps = 9/286 (3%)
Genomic Context:
Comment:
ReferenceID:515
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17657
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32378
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:256_cdd.html
URL:
Homologs By Global Alignment
Gene ID:256

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
431 PA3164_tr translation of PA3164 746 99.32 99.46 0 3747.0
23425 gb|AAG06552.1|AE004740_5 (AE004740) still frameshift 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE prephenate dehydrogenase [Pseudomonas aeruginosa PAO1] 746 99.32 99.46 0 3747.0
23426 gb|AAN67390.1|AE016365_5 (AE016780) prephenate dehydrogenase, putative/3-phosphoshikimate 1-carboxyvinyltransferase [Pseudomonas putida KT2440] 753 81.93 88.18 14 3120.0
23427 gb|AAD47362.2|AF038578_5 (AF038578) cyclohexadienyl dehydrogenase/5-enolpyruvylshikmate 3-P synthase [Pseudomonas stutzeri] 746 54.02 58.98 241 2045.0
23433 gb|AAO55268.1| (AE016862) prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase family protein [Pseudomonas syringae pv. tomato str. DC3000] 750 49.73 56.93 219 1714.0
GC ORFID: 43258How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3164Glimmer Score:
Start: 2932971Stop: 2930731
Length: 2241
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3164 translation of PA3164Homolog Bit Score 1447.0
Other Homologs: t_PA3164 (ORF: GLIMMER)
GC ORF Sequence
ATGACTGAGGTCACGCCGCTGCAACAGTCGACCCCTAAGCTGGGCCGCCTGGTGGTGGTGGGGCTGGGCCTG
ATCGGCGGCTCCTTCGCCAAGGGGTTGCGGAGCAAAGGGTTGTTCCGCGAAGTGGTCGGCGTGGATCGGGAT
GCCGAGTCTTGCCGCCTGGCGGTGGAGCTCGGCGTGGTTGACCGTTGCGAGGAGGATCTTGGTCGCGCCTGC
GTCGGCGCCGACGTGATCCAGCTGGCGGTGCCGATCCTGGCGATGGAGCGGGTGCTGGCCGACCTGGCGAAG
CTCGACCTGGGCAAGGCTGTATTGACCGACGTTGGCAGCGCCAAGGGCAATATCGTGCGTGCCGCGCGTGCC
GCGTTCGGCGGGATGCCGCGGTACCTGGTACCGGGGCATCCGATCGCGGGTTCCGAGCAGAGCGGAGTGACC
GCGGCGAAGGCGACCCTGTTCCGCCGGCACAAGGTGATTCTCACGCCCTCCGCGGAGACCGATGCCGACGCG
CTGGCGCTGGTCGACAGCCTGTGGCGCGCGCTGGGCGCGGACGTCGAGCACATGGAGGTCGAGCATCACGAC
GAGGTTCTGGCGGCCACCAGCCACCTGCCTCACCTGCTGGCCTTCACCCTGGTCGACTCCCTGGCCAAGCGC
AGCGAGAACCTGGAGATCTTCCGCTATGCCGCCGGCGGTTTCCGTGATTTCACACGGATCGCCGGCAGCGAC
CCGGTGATGTGGCACGACATCTTTCTCGCCAATCGCGAGGCGGTGCTGCGTACACTGGATGTTTTTTGTGAC
GACCTCGACGCGCTGCGCGAGGCCGTCGACACTGGGGACGGGCACCAGTTGTTGGGCGTTTTCACGCGCGCC
CGGGTAGCCCGTGAGCATTTCAGCAAAATCCTGGCCCGTCGGGCCTATGTGGACGCCATGCACAACAACGAC
CTGATTTATCTGGCCCAGCCGGGCGGCAGCCTGTCCGGAACCATCCGGGTACCGGGCGACAAGTCGATCTCC
CATCGCTCGATCATGCTCGGCTCCCTGGCCGAAGGCACCACCGAAGTGGAGGGCTTCCTCGAGGGCGAGGAC
GCACTGGCAACCATCCAGGCGTTCCGCGACATGGGAGTGGTGATCGAGGGGCCGCAGAACGGCCGCGTCACC
GTCCATGGCGTTGGCCTGCACGGCCTCAAGGCGCCGCCTGGGCCGATCTACCTGGGTAACTCCGGTACTTCC
ATGCGTCTGCTCAGCGGTCTGCTGGCGGCCCAGCCGTTCGACAGCACCCTGACCGGCGACGTTTCCCTTTCC
AAGCGGCCGATGAATCGCGTAGCCAAGCCGTTGCGCGAGATGGGCGCGGTAATCGAGACGGGGCCGGAAGGC
CGTCCGCCGATGACCATTCGCGGCGGCCAGCGCCTCACCGGTATGCATTACGACATGCCGATGGCCAGCGCC
CAGGTGAAGTCCTGCCTGTTGCTCGCCGGGCTCTACGCCGCGGGTGAGACCTCGGTCACCGAGCCGGCGCCG
ACCCGCGACCACACCGAGCGCATGCTGCGCGGCTTCGGCTATCCGGTGGAGGTCGAGGGCAGCACCGCCAAG
GTCGAATCCGGGCACAAGTTGAGCGCCACCCATATCGAGGTCCCGGCCGACATTTCCTCGGCAGCCTTCTTC
CTGGTTGCCGCCAGTATCGCCGAGGGTTCGGAACTGGTCCTGCAGCACGTCGGCATCAACCCGACGCGCGTC
GGCGTCATCGAGATCCTGCGCCTGATGGGTGGTGACCTGAGCCTGGAAAATCAGCGCGAGGTCGGCGGCGAG
CCGGTCGCCGACATCCGCGTGCGCTCCGCGCGGCTCAAGGGCATCGACATTCCCGAGGACCTGGTGCCACTG
GCCATCGACGAGTTCCCGGTACTCTTCGTGGCTGCCGCCTGCGCCGAGGGGCGCACCGTCCTGCGTGGCGCC
GAAGAGCTGCGGGTCAAGGAGTCGGACCGTATCCAGGTCATGGCCGACGGCCTGAAGGCCCTGGGCGTGAAG
GCCGAGCCGACCCCGGATGGCATCGTCATCGAGGGTGGTGCGTTCGGTGGCGGCGAAGTCTGGGCGCACGGC
GACCACCGTATCGCCATGTCCTTCAGCGTCGCTTCGCTGCGCGCCAGCGGGCCGATCCGCATCCACGATTGC
GCCAACGTCGCCACCTCCTTCCCCAACTTCCTCGCCCTGTGTGCCCAGACCGGTATCCGGGTCGCCGTGGAG
AACAATTGA