ViewGene
Locus Name:
GeneID:
Location:

GeneID:2558
TrivialName: PA14_16730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16730
PAO1 Ortholog Locus:PA3683
Sequence Length:867
Protein Length:288
Start: 1432294
Stop: 1433160
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07071.1|AE004788_1 (AE004788) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 286/288 (99%), Positives = 286/288 (99%)
Sequence:
GTGGTTTCCCTTCCTTATTTCCTCGGTTGTCCATCCTGGAACGAGGCGGCCTGGCGCGGCAGCTTTTATCCG
CGCGAATTGCGTTCCGCCGACTACCTCGGACACTACGGCGGCATCTTCAACGCGGTCGAGGGCAATACCACC
TTCTATGCCCGGCCTTCGGCGGAAACCGTGCGGCGCTGGGCCGAGACGATGCCGGCGGGGTTCCGCTTCTGT
GCCAAGTTTCCCCGCGATATCAGTCACGAAGGCGACCTGCGCGAACGGCTCGGGGCCGCCGACGACTTCCTC
GAACTGCTGGCGCCGCTTGGCGAAAGGGTCAGCCCGCTGTGGCTGCAACTGTCGGCGGCGTTCACCCCGCAG
CGCCTGGGCGAACTGCTGTATTTCCTCGATGAGCTGAGTCCGCGACGGATTGCCGTGGAAGTACGCCACCCG
GCGTTCTTCGACAAAGGCGAGGACGAGCGCCTGCTCAACCGCCACCTGCGCGAGCGTGGCGTGGAGCGCATC
TGCCTGGATTCGCGGGCGCTGTTCAGTTGCCGTTCGGACGATCCGGCGGTGCTCCACGCCCAGTCGAAGAAG
CCGCGCCTGCCGATCCGTCCGGCGGCCTTCAGCGATACGCCACAGGTGCGTTTCATCGGCGGTCCCGACCTG
CCGGCCAACGAGGTGTTCCTTTTGCCCTGGGTCGACAAGGTGGCCGACTGGATCGAGGCCGGCCTGACTCCA
TACGTATTCCTGCATACCCCCGACAATCACCTGGCGGCCCAGCAGGCCCAGCGTTTCCATGCGCTGCTGGGC
CAGCGCCTGCCAGGCTTGCCGGCGCTACCCGAGCCGATCCCGGCCCCGGAAGTGGAGCAACTGGGCCTGCTC
TGA
Translation:
MVSLPYFLGCPSWNEAAWRGSFYPRELRSADYLGHYGGIFNAVEGNTTFYARPSAETVRRWAETMPAGFRFC
AKFPRDISHEGDLRERLGAADDFLELLAPLGERVSPLWLQLSAAFTPQRLGELLYFLDELSPRRIAVEVRHP
AFFDKGEDERLLNRHLRERGVERICLDSRALFSCRSDDPAVLHAQSKKPRLPIRPAAFSDTPQVRFIGGPDL
PANEVFLLPWVDKVADWIEAGLTPYVFLHTPDNHLAAQQAQRFHALLGQRLPGLPALPEPIPAPEVEQLGLL
*
AnnotationID:2566GeneID:2558
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 11:11:07
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3683
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN80739.1|AE016761_314 (AE016761) Hypothetical protein yecE [Escherichia coli CFT073]
          Length = 272

 Score =  200 bits (508), Expect = 9e-51






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14625




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22264




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31862




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2558_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2558
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4255
                           PA3683_tr
                           translation of PA3683
                           288
                           99.30
                           99.30
                           0
                           1522.0
     

     
     
125246
                           gb|AAG07071.1|AE004788_1
                           (AE004788) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           288
                           98.95
                           99.30
                           0
                           1519.0
     

     
     
125247
                           gb|AAO55032.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           291
                           67.69
                           79.38
                           5
                           1026.0
     

     
     
125248
                           gb|AAN67130.1|AE016342_2
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           291
                           67.69
                           75.25
                           5
                           1002.0
     

     
     
125250
                           emb|CAC90864.1|
                           (AJ414151) conserved hypothetical protein [Yersinia pestis CO92]
                           289
                           43.94
                           53.97
                           19
                           567.0
     

     






      

          
GC ORFID: 45560How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3683Glimmer Score: 

          
Start: 3521643Stop: 3520777

          
Length: 867


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3683 translation of PA3683Homolog Bit Score 590.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4605 (ORF: BLASTX 394.0), t_PA3683 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGTTTCCCTTCCTTATTTCCTCGGTTGTCCATCCTGGAACGAGGCGGCCTGGCGCGGCAGCTTTTATCCG 
CGCGAATTGCGTTCCGCCGACTACCTCGGACACTACGGCGGCATCTTCAACGCGGTCGAGGGCAATACCACC 
TTCTATGCCCGGCCTTCGGCGGAAACCGTGCGGCGCTGGGCCGAGACGATGCCGGCGGGGTTCCGCTTCTGT 
GCCAAGTTTCCCCGCGATATCAGTCACGAAGGCGACCTGCGCGAACGGCTCGGGGCCGCCGACGACTTCCTC 
GAACTGCTGGCGCCGCTTGGCGAAAGGGTCAGCCCGCTGTGGCTGCAACTGTCGGCGGCGTTCACCCCGCAG 
CGCCTGGGCGAACTGCTGTATTTCCTCGATGAGCTGAGTCCGCGACGGATTGCCGTGGAAGTACGCCACCCG 
GCGTTCTTCGACAAAGGCGAGGACGAGCGCCTGCTCAACCGCCACCTGCGCGAGCGTGGCGTGGAGCGCATC 
TGCCTGGATTCGCGGGCGCTGTTCAGTTGCCGTTCGGACGATCCGGCGGTGCTCCACGCCCAGTCGAAGAAG 
CCGCGCCTGCCGATCCGTCCGGCGGCCTTCAGCGATACGCCACAGGTGCGTTTCATCGGCGGTCCCGACCTG 
CCGGCCAACGAGGTGTTCCTTTTGCCCTGGGTCGACAAGGTGGCCGACTGGATCGAGGCCGGCCTGACTCCA 
TACGTATTCCTGCATACCCCCGACAATCACCTGGCGGCCCAGCAGGCCCAGCGTTTCCATGCGCTGCTGGGC 
CAGCGCCTGCCAGGCTTGCCGGCGCTACCCGAGCCGATCCCGGCCCCGGAAGTGGAGCAACTGGGCCTGCTC 
TGA