ViewGene
Locus Name:
GeneID:
Location:

GeneID:2556
TrivialName: PA14_19160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19160
PAO1 Ortholog Locus:PA3473
Sequence Length:900
Protein Length:299
Start: 1654413
Stop: 1655312
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06861.1|AE004768_6 (AE004768) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 297/299 (99%), Positives = 297/299 (99%)
Sequence:
ATGAGGATTTCCGGGCAGGGCGTGCTGCTGTCGCTGGCCGCCTCGGTGCTGTTCGTTACCCTGCCGGGCTAC
GTCCACCTGCTGGAGCCGCTGGACAGCCTGCAGGTGGTGGCGCATCGGGTGGTCTGGTCGATCCCGATGGTA
TTCCTGCTGGTCGTCGCCACCCGCCAGTGGCCGACCCTGCGCGCCGCCTGGCGCCGGCTGTTCGCCGAGCCC
TGGCTGCTGGCCTGCTTCCCGCTGACCGCGGCGATGATGCTGCTGCAATGGGGCATCTTCATCTGGGCGCCG
TTGGCCGGGAAGACCCTTGAACTGTCGCTGGGCTACTTCCTCCTGCCGCTGGCGATGGTGCTGGTGGGGCGG
GTGTTCTACGGCGAGCGCCTGACGTCGCTGCAGGCTATCGCCGTGGCCTGCGCGCTGGCCGGGGTGCTCCAC
GAGTTCTGGCTGACCCGCGCGTTCTCCTGGGTCTCCCTGGTCACCGCGCTGGGCTATCCCCCGTACTTCATG
CTGCGGCGCAGGATGGGCGTGGACGCGCTGTCCGGGTTCGTCTTTGAGATGCTCTTCCTGCTGCCGCTGGCG
TTGGCCGCGCTGTACTGGCTGGGCGACGAGAGCCAGGCCTTCCGCGAGGCGCCGCGCCTGTGGCTGCTGCTG
CCGATGCTGGGGCTGATCAGCGCGCTGGCCTTCGGTGCGATGATGGCTTCCAGCCGGCTGCTGCCGATGGGG
CTGTTCGGGATTCTCAGCTACGTCGAACCGGTGCTGCTGTTCCTGGTGGCGGTACTGTTCCTCGGCGAAGCG
TTCCGTCCCGAGCAGCTATGGACCTACGCGCCGATCTGGCTGGCGGTGCTGTTGACCGGCTGGGACAGCGCG
CGCCTGCTGAGGAAACAGGCGCGACGGGGCATCTGA
Translation:
MRISGQGVLLSLAASVLFVTLPGYVHLLEPLDSLQVVAHRVVWSIPMVFLLVVATRQWPTLRAAWRRLFAEP
WLLACFPLTAAMMLLQWGIFIWAPLAGKTLELSLGYFLLPLAMVLVGRVFYGERLTSLQAIAVACALAGVLH
EFWLTRAFSWVSLVTALGYPPYFMLRRRMGVDALSGFVFEMLFLLPLALAALYWLGDESQAFREAPRLWLLL
PMLGLISALAFGAMMASSRLLPMGLFGILSYVEPVLLFLVAVLFLGEAFRPEQLWTYAPIWLAVLLTGWDSA
RLLRKQARRGI*
AnnotationID:2564GeneID:2556
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 10:10:40
Gene Name:
Confidence Code:3
GeneProduct:putative chloramphenicol-sensitive protein
Cell Localization:()
Synonyms:rarD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2962
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57065.1| (AE016868) rarD protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 307

 Score =  239 bits (610), Expect = 1e-62
 Identities = 130/292 (44%), Positives = 191/292 (65%), Gaps = 3/292 (1%)

>gb|AAL22799.1| (AE008884) chloramphenicol resistance [Salmonella typhimurium LT2]
          Length = 294

 Score =  160 bits (405), Expect = 8e-39
 Identities = 95/291 (32%), Positives = 159/291 (54%), Gaps = 6/291 (2%)








 
Structural Features:
COG2962, RarD, Predicted permeases
CD-Length = 293 residues,  99.7% aligned
Score =  258 bits (662), Expect = 4e-70
Identities = 130/296 (43%), Positives = 180/296 (60%), Gaps = 5/296 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5115




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22260




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32086




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2556_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2556
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4252
                           PA3473_tr
                           translation of PA3473
                           299
                           99.33
                           99.33
                           0
                           1520.0
     

     
     
125160
                           gb|AAG06861.1|AE004768_6
                           (AE004768) hypothetical protein PA3473 [Pseudomonas aeruginosa PAO1]
                           299
                           99.33
                           99.33
                           0
                           1520.0
     

     
     
125161
                           gb|AAC08598.1|
                           (AF054868) chloramphenicol-sensitive protein [Pseudomonas aeruginosa]
                           299
                           97.32
                           97.99
                           0
                           1481.0
     

     
     
125163
                           gb|AAN69038.1|AE016536_6
                           (AE016786) rarD protein [Pseudomonas putida KT2440]
                           299
                           43.47
                           61.87
                           4
                           600.0
     

     
     
125162
                           gb|AAO57065.1|
                           (AE016868) rarD protein [Pseudomonas syringae pv. tomato str. DC3000]
                           314
                           42.99
                           61.46
                           22
                           613.0
     

     






      

          
GC ORFID: 45558How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3473Glimmer Score: 

          
Start: 3299520Stop: 3298621

          
Length: 900


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3473 translation of PA3473Homolog Bit Score 590.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8186 (ORF: BLASTX 240.0), t_PA3473 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGGATTTCCGGGCAGGGCGTGCTGCTGTCGCTGGCCGCCTCGGTGCTGTTCGTTACCCTGCCGGGCTAC 
GTCCACCTGCTGGAGCCGCTGGACAGCCTGCAGGTGGTGGCGCATCGGGTGGTCTGGTCGATCCCGATGGTA 
TTCCTGCTGGTCGTCGCCACCCGCCAGTGGCCGACCCTGCGCGCCGCCTGGCGCCGGCTGTTCGCCGAGCCC 
TGGCTGCTGGCCTGCTTCCCGCTGACCGCGGCGATGATGCTGCTGCAATGGGGCATCTTCATCTGGGCGCCG 
TTGGCCGGGAAGACCCTTGAACTGTCGCTGGGCTACTTCCTCCTGCCGCTGGCGATGGTGCTGGTGGGGCGG 
GTGTTCTACGGCGAGCGCCTGACGTCGCTGCAGGCTATCGCCGTGGCCTGCGCGCTGGCCGGGGTGCTCCAC 
GAGTTCTGGCTGACCCGCGCGTTCTCCTGGGTCTCCCTGGTCACCGCGCTGGGCTATCCCCCGTACTTCATG 
CTGCGGCGCAGGATGGGCGTGGACGCGCTGTCCGGGTTCGTCTTTGAGATGCTCTTCCTGCTGCCGCTGGCG 
TTGGCCGCGCTGTACTGGCTGGGCGACGAGAGCCAGGCCTTCCGCGAGGCGCCGCGCCTGTGGCTGCTGCTG 
CCGATGCTGGGGCTGATCAGCGCGCTGGCCTTCGGTGCGATGATGGCTTCCAGCCGGCTGCTGCCGATGGGG 
CTGTTCGGGATTCTCAGCTACGTCGAACCGGTGCTGCTGTTCCTGGTGGCGGTACTGTTCCTCGGCGAAGCG 
TTCCGTCCCGAGCAGCTATGGACCTACGCGCCGATCTGGCTGGCGGTGCTGTTGACCGGCTGGGACAGCGCG 
CGCCTGCTGAGGAAACAGGCGCGACGGGGCATCTGA