ViewGene
Locus Name:
GeneID:
Location:

GeneID:2555
TrivialName: PA14_28150
AnnotatorUID: danlee
Modification Date/Time:2006-04-24 12:12:55
LocusName:PA14_28150
PAO1 Ortholog Locus:PA2778
Sequence Length:879
Protein Length:292
Start: 2437310
Stop: 2438188
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06166.1|AE004705_8 (AE004705) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 289/292 (98%), Positives = 291/292 (99%)
Sequence:
CTGCCCGCACGGGTGGAGCTGCGCGACGTGCCGTTCTTCCCTCAGGAAGCCTACCAGTGCGGTCCCGCCGCG
CTGGCCACGATGCTCGGCCAGCGCGGCCTGGCGTTGACGCCGGGACAATTGAAGGACGAGGTGTTCATTCCC
GGTCGCGAGGGCAGCTTGCAGTTGGAGATGGTCGCCGCGGCGCGCCGCCACGGCATGCTGGTCTATCCGCTG
CAAGGCGGACTGGAGAGCGTGCTCGAGGAGGTCGCGGCGGGCAACCCGGTGCTGGTGCTACAGAACCAGGCT
TTCTCCTGGTGGCCGCGCTGGCACTTCGCGGTGGTGGTCGGCTTCGATCGGGAGCGCCGCGAACTGGTGCTG
CGCTCGGGCATCACCCGGCGCTGGGTCACCGACTTCACCAGCTTCGAATCGACCTGGAAGCGTTCGGGACGC
TGGGCGGTGCTGACCCTGCCGGGTGACCGCCTGCCGGCCACGGCAGCGGCGGTCCCGTGGCTCAAGGCCGCC
AGTGACAGCGAGGAAACCGGCCACCCCAAGGTTGCCCGGCGCGCCTACGAAGAAGCCGTGCGACGCTGGCCT
GAGGACGCCTTCGCCTGGTTCGCCCTGGGCAACAGTCGCTACGCCGCAGGCGATTCCGCCGCTGCCGAACAG
GCCATGCTCACCAGCGTCGAGCGTCGCGCGGATTTCGCCGCGGGTTGGTTCAACCTGTCCCAGTTGCTGGCG
GAACGCGGTTGCGCGGCGCCGGCGCGCCAGGCGCAGGCCTGCGCGCGGGCATTGCAGCCTGGGGAAGCCCGC
TTCGCTGCGGCCTTGCCGCAGGCCGTCGCACCCGCGGCTCGGTGCGCCGAGCTGCCGGCCTGTCCCGTTGGC
GCACCGCCCCGCTGA
Translation:
MPARVELRDVPFFPQEAYQCGPAALATMLGQRGLALTPGQLKDEVFIPGREGSLQLEMVAAARRHGMLVYPL
QGGLESVLEEVAAGNPVLVLQNQAFSWWPRWHFAVVVGFDRERRELVLRSGITRRWVTDFTSFESTWKRSGR
WAVLTLPGDRLPATAAAVPWLKAASDSEETGHPKVARRAYEEAVRRWPEDAFAWFALGNSRYAAGDSAAAEQ
AMLTSVERRADFAAGWFNLSQLLAERGCAAPARQAQACARALQPGEARFAAALPQAVAPAARCAELPACPVG
APPR*
AnnotationID:2563GeneID:2555
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 02:02:15
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2778
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14623




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22258




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2555
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4251
                           PA2778_tr
                           translation of PA2778
                           293
                           98.97
                           99.31
                           1
                           1521.0
     

     
     
125159
                           gb|AAG06166.1|AE004705_8
                           (AE004705) hypothetical protein PA2778 [Pseudomonas aeruginosa PAO1]
                           293
                           98.97
                           99.31
                           1
                           1521.0
     

     






      

          
GC ORFID: 45557How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2778Glimmer Score: 

          
Start: 2516616Stop: 2515738

          
Length: 879


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2778 translation of PA2778Homolog Bit Score 590.0

          
Other Homologs:  t_PA2778 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGCCCGCACGGGTGGAGCTGCGCGACGTGCCGTTCTTCCCTCAGGAAGCCTACCAGTGCGGTCCCGCCGCG 
CTGGCCACGATGCTCGGCCAGCGCGGCCTGGCGTTGACGCCGGGACAATTGAAGGACGAGGTGTTCATTCCC 
GGTCGCGAGGGCAGCTTGCAGTTGGAGATGGTCGCCGCGGCGCGCCGCCACGGCATGCTGGTCTATCCGCTG 
CAAGGCGGACTGGAGAGCGTGCTCGAGGAGGTCGCGGCGGGCAACCCGGTGCTGGTGCTACAGAACCAGGCT 
TTCTCCTGGTGGCCGCGCTGGCACTTCGCGGTGGTGGTCGGCTTCGATCGGGAGCGCCGCGAACTGGTGCTG 
CGCTCGGGCATCACCCGGCGCTGGGTCACCGACTTCACCAGCTTCGAATCGACCTGGAAGCGTTCGGGACGC 
TGGGCGGTGCTGACCCTGCCGGGTGACCGCCTGCCGGCCACGGCAGCGGCGGTCCCGTGGCTCAAGGCCGCC 
AGTGACAGCGAGGAAACCGGCCACCCCAAGGTTGCCCGGCGCGCCTACGAAGAAGCCGTGCGACGCTGGCCT 
GAGGACGCCTTCGCCTGGTTCGCCCTGGGCAACAGTCGCTACGCCGCAGGCGATTCCGCCGCTGCCGAACAG 
GCCATGCTCACCAGCGTCGAGCGTCGCGCGGATTTCGCCGCGGGTTGGTTCAACCTGTCCCAGTTGCTGGCG 
GAACGCGGTTGCGCGGCGCCGGCGCGCCAGGCGCAGGCCTGCGCGCGGGCATTGCAGCCTGGGGAAGCCCGC 
TTCGCTGCGGCCTTGCCGCAGGCCGTCGCACCCGCGGCTCGGTGCGCCGAGCTGCCGGCCTGTCCCGTTGGC 
GCACCGCCCCGCTGA