ViewGene
Locus Name:
GeneID:
Location:

GeneID:2554
TrivialName: PA14_43940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43940
PAO1 Ortholog Locus:PA1589
Sequence Length:888
Protein Length:295
Start: 3912162
Stop: 3911275
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04978.1|AE004587_2 (AE004587) succinyl-CoA synthetase alpha chain [Pseudomonas aeruginosa PAO1]
Identities = 295/295 (100%), Positives = 295/295 (100%)
Sequence:
ATGAGCGTCCTGATCAACAAAGACACCAAAGTCATCTGCCAAGGCTTCACCGGTAGCCAGGGCACCTTCCAC
TCCGAACAGGCCATCGCCTACGGCACCAAGATGGTCGGCGGCGTGACCCCCGGCAAGGGCGGCACCACCCAC
CTCGGCCTGCCGGTGTTCAACACTGTCAAGGAAGCCGTGGAAGCCACCGGCGCCGAAGCCTCGGTCATCTAC
GTTCCGGCTCCGTTCTGCAAGGACTCGATCCTGGAAGCGGCATTCGGCGGCATCAAGCTGATCGTCTGCATC
ACCGAAGGCATCCCGACCCTCGACATGCTGGACGCCAAGGTCAAGTGCGACGAGCTGGGCGTACGCCTGATC
GGCCCGAACTGCCCGGGCGTGATCACTCCCGGCGAGTGCAAGATCGGCATCATGCCGGGTCACATCCACCTG
CCGGGCAAGGTAGGCATCGTGTCGCGTTCCGGCACCCTGACCTACGAAGCCGTGAAGCAGACCACCGACGCC
GGCTTCGGCCAGTCCACCTGCGTGGGCATCGGCGGCGACCCGATCCCGGGCTCCAACTTCATCGACATCCTG
AAGCTGTTCCAGGAAGATCCGCAGACCGAAGCCATCGTCATGATCGGCGAGATCGGCGGTTCCGCCGAAGAA
GAAGCCGCGGCCTTCATCAAGGCCAACGTGACCAAGCCGGTGGTGTCCTACATCGCTGGCGTGACTGCCCCT
CCGGGCAAGCGCATGGGCCACGCCGGCGCCATCATCTCCGGCGGCAAGGGCACCGCGGACGAGAAGTTCGCC
GCCCTGCAGGACGCCGGTGTGAAGACCGTGCGTTCCCTGGCCGACATCGGCAAGGCCCTGGCCGAGCTGACC
GGTTGGGAAGTGAAGAAGGCCTGA
Translation:
MSVLINKDTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVKEAVEATGAEASVIY
VPAPFCKDSILEAAFGGIKLIVCITEGIPTLDMLDAKVKCDELGVRLIGPNCPGVITPGECKIGIMPGHIHL
PGKVGIVSRSGTLTYEAVKQTTDAGFGQSTCVGIGGDPIPGSNFIDILKLFQEDPQTEAIVMIGEIGGSAEE
EAAAFIKANVTKPVVSYIAGVTAPPGKRMGHAGAIISGGKGTADEKFAALQDAGVKTVRSLADIGKALAELT
GWEVKKA*
AnnotationID:2562GeneID:2554
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 06:06:30
Gene Name:sucD
Confidence Code:1
GeneProduct:succinyl-CoA synthetase alpha chain
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0074
Secondary Functional Category(ies):
EC Number:6.2.1.5
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69766.1|AE016613_1 (AE016789) succinyl-CoA synthetase, alpha subunit [Pseudomonas
           putida KT2440]
          Length = 294

 Score =  576 bits (1484), Expect = e-164
 Identities = 287/294 (97%), Positives = 291/294 (98%)

>gb|AAO55719.1| (AE016863) succinyl-CoA synthase, alpha subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 293

 Score =  567 bits (1461), Expect = e-161
 Identities = 282/293 (96%), Positives = 287/293 (97%)

>gb|AAN79279.1|AE016757_183 (AE016757) Succinyl-CoA synthetase alpha chain [Escherichia coli
           CFT073]
          Length = 289

 Score =  507 bits (1305), Expect = e-143
 Identities = 252/284 (88%), Positives = 267/284 (94%)








 
Structural Features:
COG0074, SucD, Succinyl-CoA synthetase, alpha subunit 
[Energy production and conversion]
CD-Length = 293 residues,  99.3% aligned
Score =  438 bits (1127), Expect = 6e-124
Identities = 209/291 (71%), Positives = 242/291 (83%), Gaps = 1/291 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5111




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22256




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37278




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2554_cdd.html


    		




 
URL:

















    ReferenceID:37906




  
Author/Investigator(s):
        Kapatral V, Bina X, Chakrabarty AM.





  
Title:
        Succinyl coenzyme A synthetase of Pseudomonas aeruginosa with a broad specificity for nucleoside triphosphate (NTP) synthesis modulates specificity for NTP synthesis by the 12-kilodalton form of nucleoside diphosphate kinase.




  
PubMed:
        10671455


MedLine:
        




    
Source:
J Bacteriol. 2000 Mar;182(5):1333-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=10671455&dopt=Citation

















    ReferenceID:37908




  
Author/Investigator(s):
        Buck D, Spencer ME, Guest JR.





  
Title:
        Primary structure of the succinyl-CoA synthetase of Escherichia coli.




  
PubMed:
        3002435


MedLine:
        




    
Source:
Biochemistry. 1985 Oct 22;24(22):6245-52.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=86104124&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:2554
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4250
                           PA1589_tr
                           translation of PA1589
                           295
                           99.99
                           99.99
                           0
                           1521.0
     

     
     
125043
                           gb|AAG04978.1|AE004587_2
                           (AE004587) succinyl-CoA synthetase alpha chain [Pseudomonas aeruginosa PAO1]
                           295
                           99.99
                           99.99
                           0
                           1521.0
     

     
     
125044
                           gb|AAD21623.1|
                           (AF128399) succinyl-CoA synthetase alpha subunit [Pseudomonas aeruginosa]
                           295
                           99.66
                           99.66
                           0
                           1515.0
     

     
     
125045
                           gb|AAN69766.1|AE016613_1
                           (AE016789) succinyl-CoA synthetase, alpha subunit [Pseudomonas putida KT2440]
                           295
                           97.28
                           98.64
                           1
                           1484.0
     

     
     
125046
                           gb|AAO55719.1|
                           (AE016863) succinyl-CoA synthase, alpha subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           295
                           95.59
                           97.28
                           2
                           1461.0
     

     






      

          
GC ORFID: 45556How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1589Glimmer Score: 

          
Start: 1041747Stop: 1042634

          
Length: 888


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1589 translation of PA1589Homolog Bit Score 590.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1001 (ORF: BLASTX 565.0), t_PA1589 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGTCCTGATCAACAAAGACACCAAAGTCATCTGCCAAGGCTTCACCGGTAGCCAGGGCACCTTCCAC 
TCCGAACAGGCCATCGCCTACGGCACCAAGATGGTCGGCGGCGTGACCCCCGGCAAGGGCGGCACCACCCAC 
CTCGGCCTGCCGGTGTTCAACACTGTCAAGGAAGCCGTGGAAGCCACCGGCGCCGAAGCCTCGGTCATCTAC 
GTTCCGGCTCCGTTCTGCAAGGACTCGATCCTGGAAGCGGCATTCGGCGGCATCAAGCTGATCGTCTGCATC 
ACCGAAGGCATCCCGACCCTCGACATGCTGGACGCCAAGGTCAAGTGCGACGAGCTGGGCGTACGCCTGATC 
GGCCCGAACTGCCCGGGCGTGATCACTCCCGGCGAGTGCAAGATCGGCATCATGCCGGGTCACATCCACCTG 
CCGGGCAAGGTAGGCATCGTGTCGCGTTCCGGCACCCTGACCTACGAAGCCGTGAAGCAGACCACCGACGCC 
GGCTTCGGCCAGTCCACCTGCGTGGGCATCGGCGGCGACCCGATCCCGGGCTCCAACTTCATCGACATCCTG 
AAGCTGTTCCAGGAAGATCCGCAGACCGAAGCCATCGTCATGATCGGCGAGATCGGCGGTTCCGCCGAAGAA 
GAAGCCGCGGCCTTCATCAAGGCCAACGTGACCAAGCCGGTGGTGTCCTACATCGCTGGCGTGACTGCCCCT 
CCGGGCAAGCGCATGGGCCACGCCGGCGCCATCATCTCCGGCGGCAAGGGCACCGCGGACGAGAAGTTCGCC 
GCCCTGCAGGACGCCGGTGTGAAGACCGTGCGTTCCCTGGCCGACATCGGCAAGGCCCTGGCCGAGCTGACC 
GGTTGGGAAGTGAAGAAGGCCTGA