ViewGene
Locus Name:
GeneID:
Location:

GeneID:2553
TrivialName: PA14_49590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49590
PAO1 Ortholog Locus:PA1145
Sequence Length:903
Protein Length:300
Start: 4413288
Stop: 4412386
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04534.1|AE004544_6 (AE004544) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 297/300 (99%), Positives = 297/300 (99%)
Sequence:
ATGCTGAGAAACGTCACCGACCTAGACCTGCGTCTGTTGCGCATCTTCGCCTGCGTGGTGAAGTGCGGCGGT
TTCACCGCGGCCCAGGCCGAGCTGAACATGAGCCAGTCGAACATCAGCATGCACATCGCCAGCCTGGAGAAG
CGCCTCGGCTACCGGCTCTGCGAGCGCGGCAAGGGCGGCTTCCGACTGACCGCCAAGGGCCGCCGGGTGCTG
GAGGCTTCGCGAACGATGTTCGACGCCATCGGCCTGTTTCGCGACCAGGCGCAGGCGTTGTCCGGACGTTTG
GTCGGGGAACTGTACCTGGGCCTGGCGGACAATCTCGCGACCTTGCCCCAGGCCCGTTTCGGCGATGCGCTG
GCGCGCTTCCAGCGGCGCGACCAGGATGTCCAACTGAACCTTTTCGTCAATTCGCCCACCGAGCTGGAACTG
GCGGTGATCGAAGGCGAGCTGGACCTGGCGATTTCCTATTTCAGCCGTTCGCGGCCGAGCCTCGAATACCGC
CCGCTGTATCGTGAAGAGATCGGCGTGTTCTGTGGCGATCACCATCCGCTGTTCGCCGAGGCGCAGCCGACT
CTGGAGCGGATCGCCGCCTGCGACTGGGTGATGCACGGCTTCCTGCCGGAAAACCTGGTCCTGCCGCTACGC
CCGTCGCGCAGCCGCGCCACCGCCTACCACATGGAAGCGGTCGCCCATGCCGTGCTGGCCGGCACCCACCTG
GGCTACCTGCCGACCCATTACGCCGAAGCCTGGATCGAGCGCGGGCGGATGCGCGCGCTGTTGCCGGAGCGG
CTGAGCTATCCGGTGGAGCACCGCATGATCGTCTATGCCGGGCGCCCCCTCAGCGAAGCCGCCCGCGCCTTC
ATCGACGACCTGCTGCAGGTCCACGGCCTGACGTCCTGA
Translation:
MLRNVTDLDLRLLRIFACVVKCGGFTAAQAELNMSQSNISMHIASLEKRLGYRLCERGKGGFRLTAKGRRVL
EASRTMFDAIGLFRDQAQALSGRLVGELYLGLADNLATLPQARFGDALARFQRRDQDVQLNLFVNSPTELEL
AVIEGELDLAISYFSRSRPSLEYRPLYREEIGVFCGDHHPLFAEAQPTLERIAACDWVMHGFLPENLVLPLR
PSRSRATAYHMEAVAHAVLAGTHLGYLPTHYAEAWIERGRMRALLPERLSYPVEHRMIVYAGRPLSEAARAF
IDDLLQVHGLTS*
AnnotationID:2561GeneID:2553
AnnotatorUID: danlee
Modification Date/Time: 2004-09-13 14:02:10
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA1145
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583, pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator. Score: 120, 2e-28
pfam03466, LysR_substrate, LysR substrate binding domain. Score: 101, 1e-22






   
Genomic Context:






   
Comment:


















    ReferenceID:5109




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22254




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2553
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4247
                           PA1145_tr
                           translation of PA1145
                           300
                           99.00
                           99.00
                           0
                           1522.0
     

     
     
125039
                           gb|AAG04534.1|AE004544_6
                           (AE004544) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           300
                           99.00
                           99.00
                           0
                           1522.0
     

     
     
125040
                           gb|AAN67807.1|AE016411_12
                           (AE016782) transcriptional regulator, LysR family [Pseudomonas putida KT2440]
                           300
                           43.00
                           58.33
                           4
                           585.0
     

     
     
4248
                           PA0289_tr
                           translation of PA0289
                           329
                           40.42
                           53.79
                           38
                           586.0
     

     
     
125041
                           gb|AAG03678.1|AE004466_12
                           (AE004466) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           329
                           40.42
                           53.79
                           38
                           586.0
     

     






      

          
GC ORFID: 45555How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1145Glimmer Score: 

          
Start: 540620Stop: 541522

          
Length: 903


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1145 translation of PA1145Homolog Bit Score 590.0

          
Other Homologs:  t_PA0289 (ORF: BLASTX 227.0), t_PA1422 (ORF: BLASTX 201.0), t_PA1145 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAGAAACGTCACCGACCTAGACCTGCGTCTGTTGCGCATCTTCGCCTGCGTGGTGAAGTGCGGCGGT 
TTCACCGCGGCCCAGGCCGAGCTGAACATGAGCCAGTCGAACATCAGCATGCACATCGCCAGCCTGGAGAAG 
CGCCTCGGCTACCGGCTCTGCGAGCGCGGCAAGGGCGGCTTCCGACTGACCGCCAAGGGCCGCCGGGTGCTG 
GAGGCTTCGCGAACGATGTTCGACGCCATCGGCCTGTTTCGCGACCAGGCGCAGGCGTTGTCCGGACGTTTG 
GTCGGGGAACTGTACCTGGGCCTGGCGGACAATCTCGCGACCTTGCCCCAGGCCCGTTTCGGCGATGCGCTG 
GCGCGCTTCCAGCGGCGCGACCAGGATGTCCAACTGAACCTTTTCGTCAATTCGCCCACCGAGCTGGAACTG 
GCGGTGATCGAAGGCGAGCTGGACCTGGCGATTTCCTATTTCAGCCGTTCGCGGCCGAGCCTCGAATACCGC 
CCGCTGTATCGTGAAGAGATCGGCGTGTTCTGTGGCGATCACCATCCGCTGTTCGCCGAGGCGCAGCCGACT 
CTGGAGCGGATCGCCGCCTGCGACTGGGTGATGCACGGCTTCCTGCCGGAAAACCTGGTCCTGCCGCTACGC 
CCGTCGCGCAGCCGCGCCACCGCCTACCACATGGAAGCGGTCGCCCATGCCGTGCTGGCCGGCACCCACCTG 
GGCTACCTGCCGACCCATTACGCCGAAGCCTGGATCGAGCGCGGGCGGATGCGCGCGCTGTTGCCGGAGCGG 
CTGAGCTATCCGGTGGAGCACCGCATGATCGTCTATGCCGGGCGCCCCCTCAGCGAAGCCGCCCGCGCCTTC 
ATCGACGACCTGCTGCAGGTCCACGGCCTGACGTCCTGA