ViewGene
Locus Name:
GeneID:
Location:

GeneID:2552
TrivialName: PA14_71150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71150
PAO1 Ortholog Locus:PA5387
Sequence Length:885
Protein Length:294
Start: 6338701
Stop: 6337817
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08772.1|AE004951_6 (AE004951) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 292/294 (99%), Positives = 293/294 (99%)
Sequence:
GTGAACCATGAAGTCATCGTCACCTGCGCGGTGACCGGCGCCGGCGATACCGTCGGCCGGCATCCGGCGATC
CCGGTCACCCCGAAACAGATTGCCGAGGCCGCCATCGAGGCGGCCAGGGCCGGCGCCACCGTCGCCCACTGC
CATGTCCGCGACCCCGCCACCGGCAAGCCCAGTCGCGACGTGGCGCTGTACCGCGAAGTGGTCGAGCGCATC
CGCGAAAGCGACACCGACGTGATCATCAACCTCACCGCCGGCATGGGCGGCGACCTGGAGATCGGCAAGGGC
GAGCAGCCCCTGGAGTTCGGTGTCGGCACCGACCTGGTCGGCCCGCTGGAGCGGCTCAGGCATGTCGAGGAG
CTGCTGCCGGAAATCTGCACCCTGGACTGCGGCACCCTCAACTTCGGCGACGGCGACTACATCTACGTCTCC
ACCCCTGCGCAACTGCGCGCCGGCGCCCAGCGCATCACCGAGCTGGGGGTCAAGGCCGAGCTGGAAATCTTC
GATACCGGCCACCTCTGGTTCGCCAAGCAGATGCTCAAGGAAGGGCTGCTGGAGGATCCGCTGTTCCAGATC
TGCCTGGGCATTCCCTGGGGCGCGCCGGCCGATACCACGACCATGAAGGCGATGGCCGACAACCTGCCGCCG
GGGGCGACCTGGGCCGGCTTCGGCATCGGCCGCACGCAGATGCCGATGGTCGCCCAGGCCATGTTGCTGGGC
GGCAACGTGCGGGTCGGCCTGGAGGACAACATCTGGCTGGACAAGGGCGTGCCGGCGAGCAACGGCAGCCTG
GTGGAGCGCGCCATCGAGATCATCGAGCGCCTCGGCGGGCGCGCCCTGAGCCCGGCGGAAGGGCGCCGCAGG
ATGAACCTGAAGCCGCGCTGA
Translation:
MNHEVIVTCAVTGAGDTVGRHPAIPVTPKQIAEAAIEAARAGATVAHCHVRDPATGKPSRDVALYREVVERI
RESDTDVIINLTAGMGGDLEIGKGEQPLEFGVGTDLVGPLERLRHVEELLPEICTLDCGTLNFGDGDYIYVS
TPAQLRAGAQRITELGVKAELEIFDTGHLWFAKQMLKEGLLEDPLFQICLGIPWGAPADTTTMKAMADNLPP
GATWAGFGIGRTQMPMVAQAMLLGGNVRVGLEDNIWLDKGVPASNGSLVERAIEIIERLGGRALSPAEGRRR
MNLKPR*
AnnotationID:2560GeneID:2552
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 08:08:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5387
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14621




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22252




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34674




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2552_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2552
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4246
                           PA5387_tr
                           translation of PA5387
                           294
                           99.31
                           99.65
                           0
                           1523.0
     

     
     
125028
                           gb|AAG08772.1|AE004951_6
                           (AE004951) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           294
                           98.97
                           99.65
                           0
                           1520.0
     

     
     
125029
                           gb|AAN65934.1|AE016221_6
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           294
                           81.63
                           90.13
                           0
                           1283.0
     

     
     
125030
                           emb|CAC37900.1|
                           (AL939127) conserved hypothetical protein [Streptomyces coelicolor A3(2)]
                           309
                           61.16
                           74.11
                           16
                           984.0
     

     
     
125031
                           gb|AAL46030.1|
                           (AE008956) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           295
                           60.00
                           75.93
                           1
                           946.0
     

     






      

          
GC ORFID: 45554How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5387Glimmer Score: 

          
Start: 5602390Stop: 5601506

          
Length: 885


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5387 translation of PA5387Homolog Bit Score 591.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7150 (ORF: BLASTX 490.0), t_PA5387 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAACCATGAAGTCATCGTCACCTGCGCGGTGACCGGCGCCGGCGATACCGTCGGCCGGCATCCGGCGATC 
CCGGTCACCCCGAAACAGATTGCCGAGGCCGCCATCGAGGCGGCCAGGGCCGGCGCCACCGTCGCCCACTGC 
CATGTCCGCGACCCCGCCACCGGCAAGCCCAGTCGCGACGTGGCGCTGTACCGCGAAGTGGTCGAGCGCATC 
CGCGAAAGCGACACCGACGTGATCATCAACCTCACCGCCGGCATGGGCGGCGACCTGGAGATCGGCAAGGGC 
GAGCAGCCCCTGGAGTTCGGTGTCGGCACCGACCTGGTCGGCCCGCTGGAGCGGCTCAGGCATGTCGAGGAG 
CTGCTGCCGGAAATCTGCACCCTGGACTGCGGCACCCTCAACTTCGGCGACGGCGACTACATCTACGTCTCC 
ACCCCTGCGCAACTGCGCGCCGGCGCCCAGCGCATCACCGAGCTGGGGGTCAAGGCCGAGCTGGAAATCTTC 
GATACCGGCCACCTCTGGTTCGCCAAGCAGATGCTCAAGGAAGGGCTGCTGGAGGATCCGCTGTTCCAGATC 
TGCCTGGGCATTCCCTGGGGCGCGCCGGCCGATACCACGACCATGAAGGCGATGGCCGACAACCTGCCGCCG 
GGGGCGACCTGGGCCGGCTTCGGCATCGGCCGCACGCAGATGCCGATGGTCGCCCAGGCCATGTTGCTGGGC 
GGCAACGTGCGGGTCGGCCTGGAGGACAACATCTGGCTGGACAAGGGCGTGCCGGCGAGCAACGGCAGCCTG 
GTGGAGCGCGCCATCGAGATCATCGAGCGCCTCGGCGGGCGCGCCCTGAGCCCGGCGGAAGGGCGCCGCAGG 
ATGAACCTGAAGCCGCGCTGA