ViewGene

Locus Name:
GeneID:
Location:

GeneID:2550
TrivialName: PA14_63200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63200
PAO1 Ortholog Locus:PA4780
Sequence Length:894
Protein Length:297
Start: 5640987
Stop: 5640094
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08166.1|AE004891_8 (AE004891) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 297/297 (100%), Positives = 297/297 (100%)
Sequence:
ATGAAGACACCCAGACGCCTGGAACCGTTGATCGAAGACGGTCTGATCGACGAGGTCGTGCGCCCGCTGATG
AGCGGCAAGGAAGCCTCGGTCTATGTGGTGCGTTGCGGCGACAGCCTGCGTTGCGCCAAGGTCTACAAGGAG
GCCAACAAGCGCAGCTTCCGCCAGGCCGCCGAGTACCAGGAGGGCCGCAAGGTCCGCAACAGCCGCCAGGCG
CGGGCCATGGCCAAGGGCTCGAAGTATGGCCGCCGCGAACAGGAGGAAGCCTGGCAGAATGCCGAAGTGGCG
GCCCTGTTCCGTCTCGCCGGGGCCGGTGTGCGGGTGCCGAAGCCCTATGATTTCCTCGATGGCGTGTTGCTG
ATGGAACTGGTGGCGGACGCCGACGGCGATGCTGCGCCGCGTCTCAACGACGTGACGCTGGAGCCCGACGAG
GCACGGCGCCACCACGCTTTCCTGATCCGCCAGATCGTTGCCATGCTCTGCGCCGGCCTGGTGCACGGCGAC
CTCTCCGAGTTCAACGTCCTGCTCGGTCCGGATGGCCCGGTGATCATCGACTTGCCGCAGGCGGTCGACGCG
GCCGGCAACAACCATGCGTTCAGCATGCTCGAACGCGACGTCGGCAACATGGCCGCCTACTTCGGCCGCTTC
GCCCCGGAACTCAGGCAGACCCGCTATGCCAAGGAAATGTGGGCGCTCTACGAAGCCGGCGAGCTGACAGCG
GAAACCCCGCTCAGCGGCACCTTCGTCGAAGCCGAAGAGGCCGCCGACGTGCGCGCGGTGCTCCGCGAGATC
GAGGCCGCGCAGCGCGAGGAGGCGCGTCGCCAGGCGCTGCGCCAGGCCGACGACGCGCCGCGTGGCGAGCGC
GAGGAACCGCCGCCGCCCTGGTTGCAGTGA
Translation:
MKTPRRLEPLIEDGLIDEVVRPLMSGKEASVYVVRCGDSLRCAKVYKEANKRSFRQAAEYQEGRKVRNSRQA
RAMAKGSKYGRREQEEAWQNAEVAALFRLAGAGVRVPKPYDFLDGVLLMELVADADGDAAPRLNDVTLEPDE
ARRHHAFLIRQIVAMLCAGLVHGDLSEFNVLLGPDGPVIIDLPQAVDAAGNNHAFSMLERDVGNMAAYFGRF
APELRQTRYAKEMWALYEAGELTAETPLSGTFVEAEEAADVRAVLREIEAAQREEARRQALRQADDAPRGER
EEPPPPWLQ*
AnnotationID:2558GeneID:2550
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 07:07:04
Gene Name:
Confidence Code:3
GeneProduct:putative serine/threonine protein kinase
Cell Localization:()
Synonyms:PA4780
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1718,pfam01163,smart00090
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54290.1| (AE016858) RIO1/ZK632.3/MJ0444 family protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 298

 Score =  496 bits (1276), Expect = e-140
 Identities = 248/298 (83%), Positives = 268/298 (89%), Gaps = 1/298 (0%)

>gb|AAN68520.1|AE016484_2 (AE016784) RIO1/ZK632.3/MJ0444 family protein [Pseudomonas putida
           KT2440]
          Length = 297

 Score =  473 bits (1218), Expect = e-133
 Identities = 232/297 (78%), Positives = 261/297 (87%)

>gb|AAN56947.1|AE015828_3 (AE015828) RIO1/ZK632.3/MJ0444 family, putative [Shewanella
           oneidensis MR-1]
          Length = 285

 Score =  376 bits (966), Expect = e-104
 Identities = 186/283 (65%), Positives = 228/283 (80%), Gaps = 1/283 (0%)
Structural Features:
COG1718, RIO1, Serine/threonine protein kinase involved in cell cycle control 
[Signal transduction mechanisms / Cell division and chromosome partitioning]
CD-Length = 268 residues,  92.5% aligned
Score =  225 bits (576), Expect = 4e-60
Identities = 89/286 (31%), Positives = 124/286 (43%), Gaps = 44/286 (15%)

pfam01163, RIO1, RIO1 family.
CD-Length = 192 residues, 100.0% aligned
Score =  169 bits (430), Expect = 4e-43
Identities = 80/205 (39%), Positives = 103/205 (50%), Gaps = 16/205 (7%)

smart00090, RIO, RIO-like kinase
CD-Length = 235 residues,  83.4% aligned
Score =  128 bits (324), Expect = 6e-31
Identities = 69/208 (33%), Positives = 103/208 (49%), Gaps = 14/208 (6%)
Genomic Context:
Comment:
ReferenceID:5103
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22248
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37703
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2550_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2550

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4244 PA4780_tr translation of PA4780 297 99.99 99.99 0 1523.0
124977 gb|AAG08166.1|AE004891_8 (AE004891) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 297 99.99 99.99 0 1523.0
124978 gb|AAO54290.1| (AE016858) RIO1/ZK632.3/MJ0444 family protein [Pseudomonas syringae pv. tomato str. DC3000] 298 83.22 89.93 1 1278.0
124979 gb|AAN68520.1|AE016484_2 (AE016784) RIO1/ZK632.3/MJ0444 family protein [Pseudomonas putida KT2440] 298 78.52 88.59 2 1220.0
124980 gb|AAM86129.1|AE013859_10 (AE013859) hypothetical [Yersinia pestis KIM] 297 64.30 76.09 14 978.0
GC ORFID: 45552How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4780Glimmer Score:
Start: 4904667Stop: 4903774
Length: 894
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4780 translation of PA4780Homolog Bit Score 591.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3485 (ORF: BLASTX 495.0), t_PA4780 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGACACCCAGACGCCTGGAACCGTTGATCGAAGACGGTCTGATCGACGAGGTCGTGCGCCCGCTGATG
AGCGGCAAGGAAGCCTCGGTCTATGTGGTGCGTTGCGGCGACAGCCTGCGTTGCGCCAAGGTCTACAAGGAG
GCCAACAAGCGCAGCTTCCGCCAGGCCGCCGAGTACCAGGAGGGCCGCAAGGTCCGCAACAGCCGCCAGGCG
CGGGCCATGGCCAAGGGCTCGAAGTATGGCCGCCGCGAACAGGAGGAAGCCTGGCAGAATGCCGAAGTGGCG
GCCCTGTTCCGTCTCGCCGGGGCCGGTGTGCGGGTGCCGAAGCCCTATGATTTCCTCGATGGCGTGTTGCTG
ATGGAACTGGTGGCGGACGCCGACGGCGATGCTGCGCCGCGTCTCAACGACGTGACGCTGGAGCCCGACGAG
GCACGGCGCCACCACGCTTTCCTGATCCGCCAGATCGTTGCCATGCTCTGCGCCGGCCTGGTGCACGGCGAC
CTCTCCGAGTTCAACGTCCTGCTCGGTCCGGATGGCCCGGTGATCATCGACTTGCCGCAGGCGGTCGACGCG
GCCGGCAACAACCATGCGTTCAGCATGCTCGAACGCGACGTCGGCAACATGGCCGCCTACTTCGGCCGCTTC
GCCCCGGAACTCAGGCAGACCCGCTATGCCAAGGAAATGTGGGCGCTCTACGAAGCCGGCGAGCTGACAGCG
GAAACCCCGCTCAGCGGCACCTTCGTCGAAGCCGAAGAGGCCGCCGACGTGCGCGCGGTGCTCCGCGAGATC
GAGGCCGCGCAGCGCGAGGAGGCGCGTCGCCAGGCGCTGCGCCAGGCCGACGACGCGCCGCGTGGCGAGCGC
GAGGAACCGCCGCCGCCCTGGTTGCAGTGA