ViewGene

Locus Name:
GeneID:
Location:

GeneID:255
TrivialName: PA14_36020
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36020
PAO1 Ortholog Locus:
Sequence Length:2304
Protein Length:767
Start: 3208643
Stop: 3206340
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK01493.1| (AF241171) paraquat-inducible protein B [Pseudomonas aeruginosa]
Identities = 764/767 (99%), Positives = 765/767 (99%) to gene #3 of PAGI-1 island and to PA4689 of PAO1.
Sequence:
ATGAGTGATTTGCCAAGCCCGAAGAAACACAAGACCTCGAACTGGTCGGCGATCTGGGTGCTGCCGCTGGTG
GCCCTGGCTATCGGGGCCTGGCTGGGCTGGCGCGCCTACGACCAGGCAGGGGTGCTGATCCAGGTGCGCTTC
GAGAGCAGCGATGGCATCCAGGCGAAGAAGACCGAGGTGCTGTACAAGGGCATCGCGGTCGGCAAGGTCGTC
GCGCTGGATGTCAGCGAAGATATCAAGGGCGTGGTGGCCACCATCGAAATGGACAAGGAGGCGCGCCAGTAC
CTGAGCAAGGGTACCCGCTTCTGGCTGGTCAAGCCGCGGGTTTCCCTGGCTGGCGTCACCGGCCTGGAAACC
CTGGTCTCTGGCGTCTACATCGCGGTCGATCCGGTGAAGGGCGAGAAGGAAGAACGCAACTTCACCGCGCTG
AAGCAGCCGCCCCCCCTTTCCGACAGGCTGCCCGGCCTGCACCTGACCCTCAAGGCCGATCGCCTGGGCTCC
CTCGAGCAGGGCAGCCCGGTGTTCTACCGGCAGATCCAGGTCGGCCAGGTGAAGAGCTTCCAGTTGGGCGAT
GACCAGAGGACCATCGAGATCAAGGTGCACATCGAGCCGGCCTACGCCGACCTGGTGCGCAAGCACACGCGA
TTCTGGAACGCCAGCGGCATCTCCATTTCCGGCGGCCTGTCCGGCTTCAAGGTGCGTAGCGAATCGTTGCTG
ACCCTGGCGGCCGGCGGCATCGCTTTCGCTACTTCCGATAGTCGAGGCGACAGCCCGCCGACCGATCCGAGC
AAGCCGTTCCGTCTGTACGACGACTACGACGCGGCCCAGGCCGGTCTGCGCGTGAAGCTGAAGATGAACGAC
GTCAGTGGTATCGATCCGGGCCGCACCCCGGTGATGTTCAACGGCGTGCAGGTCGGCCTGGTCAAGTCGATC
GACATGGGCAAGGACTACAGCAGCGCCACTGCCGACCTGGCGATGGATCCGCGGGTCGAGGACATGCTGCTG
GAAGGCACCGAGTTCTGGACCGTCAAGCCAAGCATCTCCCTGGCCGGCATCACCGGCCTCGAGGCCCTGGTG
AAAGGTAACTATATCGACGTGCGCTTCGCCAAGAGCGGCGCGCCGAGTCGCGAGTTCACCATCCGCCCGAAA
GCGCCGCCGCTGAACACCGACGCGCCCGGCCTGCACCTGGTGCTGACCAGCGACAAGCTCGGCTCAATCGAC
ATCGGCGCGCCGATCCTCTACCGCCAGGTCCGCGTCGGCAGCGTGCAGAGCTACCAGCTATCGCGCGACCGC
CAGCGAGTGGTAGTGGGTGTGCACATCGAGCCGGAGTACGCGCACCTGGTGAATACCTCGACGCGCTTCTGG
AACTCCAGCGGGATCACCCTGACCGGCAACCTCAGCGGCGTGCAGGTGAAGAGCGAGTCGCTACAGACCCTG
ATCACCGGCGGGATTTCCTTCGACACCCTCGATCCGAAGGCGCCGACCGTGACCAAGGTGCGTCGCTTCACC
CTCTTCGACAGCGAGGAGGCGGCGATGGCCCGTGGCGTGGAGATCCAGCTGAGCATCGACAATGCCGACGGC
CTGCGCGAAGGCACGCCGATCCGCTTCAAGGGCCTGGACATCGGCAAGATCGAAAGCGTCGAGCTGAACCCG
GACCTCTCCGGGGTACTGATGAAGGCCCGCCTGACTTCCGCTGGCGAGCGCGTCGCCCGCAGCGGAACCCGC
TTCTGGGTGGTGCGTCCGGCGCTCGGCCTGCTGCGTACCGAGAACCTCGGAACCCTGGTCAGCGGCCCCTAC
ATCGAGGCGCTGCCGTCGAGCACGCCGGGCGAGCGCCAGGCACGCTTCCAGACTCTCGCCGAAGCGCCCAAC
CTGCTGGGTCGGGAAAACGGCCTGCGGCTGACCCTCAGTGCGCCGCGCAAGGGCTCGATCAAGCCGGGCAAC
CTGGTGACCTACCGGCAGATCCCGGTGGGCAAGGTCGTCGACCTGGCCTTGGGCGAACAGGCCGACCGGGTG
CTGATCAGCATCCTCATCGAACCGCGCTACGTACCGCTGGTGCGTACCGGCAGCCGTTTCTGGAATGCCAGC
GGCTTCGGCGTCGACGCCAGCCTGTTCAAGGGCCTGTCGCTACGCACCGAGTCGATGGAGGCGCTGATGGAG
GGCGGCATTGCCTTCGCCACCCCGAACAATGCGCAGATGGGCGAGCCCGCCAAGCCGGGGCAGACCTTCGCC
CTGTTCGATTCGGCCAATGACGAATGGCTGGAGTGGGCGCCCAGGATCGCCCTGAGGCGCGGGGCCCGTTGA
Translation:
MSDLPSPKKHKTSNWSAIWVLPLVALAIGAWLGWRAYDQAGVLIQVRFESSDGIQAKKTEVLYKGIAVGKVV
ALDVSEDIKGVVATIEMDKEARQYLSKGTRFWLVKPRVSLAGVTGLETLVSGVYIAVDPVKGEKEERNFTAL
KQPPPLSDRLPGLHLTLKADRLGSLEQGSPVFYRQIQVGQVKSFQLGDDQRTIEIKVHIEPAYADLVRKHTR
FWNASGISISGGLSGFKVRSESLLTLAAGGIAFATSDSRGDSPPTDPSKPFRLYDDYDAAQAGLRVKLKMND
VSGIDPGRTPVMFNGVQVGLVKSIDMGKDYSSATADLAMDPRVEDMLLEGTEFWTVKPSISLAGITGLEALV
KGNYIDVRFAKSGAPSREFTIRPKAPPLNTDAPGLHLVLTSDKLGSIDIGAPILYRQVRVGSVQSYQLSRDR
QRVVVGVHIEPEYAHLVNTSTRFWNSSGITLTGNLSGVQVKSESLQTLITGGISFDTLDPKAPTVTKVRRFT
LFDSEEAAMARGVEIQLSIDNADGLREGTPIRFKGLDIGKIESVELNPDLSGVLMKARLTSAGERVARSGTR
FWVVRPALGLLRTENLGTLVSGPYIEALPSSTPGERQARFQTLAEAPNLLGRENGLRLTLSAPRKGSIKPGN
LVTYRQIPVGKVVDLALGEQADRVLISILIEPRYVPLVRTGSRFWNASGFGVDASLFKGLSLRTESMEALME
GGIAFATPNNAQMGEPAKPGQTFALFDSANDEWLEWAPRIALRRGAR*
AnnotationID:265GeneID:255
AnnotatorUID: danlee
Modification Date/Time: 2005-10-11 15:03:40
Gene Name:PAGI-1(3)
Confidence Code:4
GeneProduct:paraquat-inducible protein B
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3008
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|12698379|gb|AAK01493.1|  paraquat-inducible protein B [Pseudomonas aeruginosa]
     Length=767
     Score = 1499 bits (3882),  Expect = 0.0
     Identities = 764/767 (99%), Positives = 765/767 (99%), Gaps = 0/767 (0%)

gi|9950946|gb|AAG08076.1|  hypothetical protein PA4689 [Pseudomonas aeruginosa PAO1]
     Length=768
     Score = 1449 bits (3750),  Expect = 0.0
     Identities = 737/767 (96%), Positives = 750/767 (97%), Gaps = 0/767 (0%)

gi|24981987|gb|AAN66225.1|  PqiB family protein [Pseudomonas putida KT2440]
     Length=766
     Score =  988 bits (2553),  Expect = 0.0
     Identities = 491/767 (64%), Positives = 604/767 (78%), Gaps = 4/767 (0%)
Structural Features:
COG3008, PqiB, Paraquat-inducible protein B [General function prediction only].
             CD-Length = 553 residues,  97.5% aligned
             Score =  537 bits (1384), Expect = 2e-153
Genomic Context:
Predicted gene #3 of the PAGI-1 island absent in PAO1 but present in a majority of pathogenic P. aeruginosa isolates.   
The PA14 island at this locus, from PA14_35860 to PA14_36030, corresponds to PAGI-1 genes 17 through 2, respectively.
Comment:
The first half of the PA14 island (from PA14_35700 through PA14_35850) diverges from PAGI-1 such that 
genes 18 through 51 are absent.  PA14 has 31 ORFs in 35368 bp (from PA14_35700 to PA14_36030), 
whereas PAGI-1 contains 51 ORFs in 51300 bp.
ReferenceID:513
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17655
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:38196
Author/Investigator(s): Liang X, Pham XQ, Olson MV, Lory S.
Title: Identification of a genomic island present in the majority of pathogenic isolates of Pseudomonas aeruginosa.
PubMed: 11208781
MedLine:
Source:
J Bacteriol. 2001 Feb;183(3):843-53.
Reference Type:
Data:
URL:
Homologs By Global Alignment
Gene ID:255

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
23421 gb|AAK01493.1| (AF241171) paraquat-inducible protein B [Pseudomonas aeruginosa] 767 99.60 99.73 0 3882.0
430 PA4689_tr translation of PA4689 768 95.96 97.65 1 3750.0
23422 gb|AAG08076.1|AE004882_7 (AE004882) hypothetical protein PA4689 [Pseudomonas aeruginosa PAO1] 768 95.96 97.65 1 3750.0
23423 gb|AAN66225.1|AE016251_1 (AE016776) PqiB family protein [Pseudomonas putida KT2440] 770 63.76 78.44 7 2559.0
23424 dbj|BAA15642.1| (D90826) Paraquat-inducible protein B (fragment). [Escherichia coli] 773 13.71 20.43 506 479.0
GC ORFID: 43257How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4689Glimmer Score:
Start: 1745273Stop: 1747576
Length: 2304
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4689 translation of PA4689Homolog Bit Score 1449.0
Other Homologs: t_PA4689 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTGATTTGCCAAGCCCGAAGAAACACAAGACCTCGAACTGGTCGGCGATCTGGGTGCTGCCGCTGGTG
GCCCTGGCTATCGGGGCCTGGCTGGGCTGGCGCGCCTACGACCAGGCAGGGGTGCTGATCCAGGTGCGCTTC
GAGAGCAGCGATGGCATCCAGGCGAAGAAGACCGAGGTGCTGTACAAGGGCATCGCGGTCGGCAAGGTCGTC
GCGCTGGATGTCAGCGAAGATATCAAGGGCGTGGTGGCCACCATCGAAATGGACAAGGAGGCGCGCCAGTAC
CTGAGCAAGGGTACCCGCTTCTGGCTGGTCAAGCCGCGGGTTTCCCTGGCTGGCGTCACCGGCCTGGAAACC
CTGGTCTCTGGCGTCTACATCGCGGTCGATCCGGTGAAGGGCGAGAAGGAAGAACGCAACTTCACCGCGCTG
AAGCAGCCGCCCCCCCTTTCCGACAGGCTGCCCGGCCTGCACCTGACCCTCAAGGCCGATCGCCTGGGCTCC
CTCGAGCAGGGCAGCCCGGTGTTCTACCGGCAGATCCAGGTCGGCCAGGTGAAGAGCTTCCAGTTGGGCGAT
GACCAGAGGACCATCGAGATCAAGGTGCACATCGAGCCGGCCTACGCCGACCTGGTGCGCAAGCACACGCGA
TTCTGGAACGCCAGCGGCATCTCCATTTCCGGCGGCCTGTCCGGCTTCAAGGTGCGTAGCGAATCGTTGCTG
ACCCTGGCGGCCGGCGGCATCGCTTTCGCTACTTCCGATAGTCGAGGCGACAGCCCGCCGACCGATCCGAGC
AAGCCGTTCCGTCTGTACGACGACTACGACGCGGCCCAGGCCGGTCTGCGCGTGAAGCTGAAGATGAACGAC
GTCAGTGGTATCGATCCGGGCCGCACCCCGGTGATGTTCAACGGCGTGCAGGTCGGCCTGGTCAAGTCGATC
GACATGGGCAAGGACTACAGCAGCGCCACTGCCGACCTGGCGATGGATCCGCGGGTCGAGGACATGCTGCTG
GAAGGCACCGAGTTCTGGACCGTCAAGCCAAGCATCTCCCTGGCCGGCATCACCGGCCTCGAGGCCCTGGTG
AAAGGTAACTATATCGACGTGCGCTTCGCCAAGAGCGGCGCGCCGAGTCGCGAGTTCACCATCCGCCCGAAA
GCGCCGCCGCTGAACACCGACGCGCCCGGCCTGCACCTGGTGCTGACCAGCGACAAGCTCGGCTCAATCGAC
ATCGGCGCGCCGATCCTCTACCGCCAGGTCCGCGTCGGCAGCGTGCAGAGCTACCAGCTATCGCGCGACCGC
CAGCGAGTGGTAGTGGGTGTGCACATCGAGCCGGAGTACGCGCACCTGGTGAATACCTCGACGCGCTTCTGG
AACTCCAGCGGGATCACCCTGACCGGCAACCTCAGCGGCGTGCAGGTGAAGAGCGAGTCGCTACAGACCCTG
ATCACCGGCGGGATTTCCTTCGACACCCTCGATCCGAAGGCGCCGACCGTGACCAAGGTGCGTCGCTTCACC
CTCTTCGACAGCGAGGAGGCGGCGATGGCCCGTGGCGTGGAGATCCAGCTGAGCATCGACAATGCCGACGGC
CTGCGCGAAGGCACGCCGATCCGCTTCAAGGGCCTGGACATCGGCAAGATCGAAAGCGTCGAGCTGAACCCG
GACCTCTCCGGGGTACTGATGAAGGCCCGCCTGACTTCCGCTGGCGAGCGCGTCGCCCGCAGCGGAACCCGC
TTCTGGGTGGTGCGTCCGGCGCTCGGCCTGCTGCGTACCGAGAACCTCGGAACCCTGGTCAGCGGCCCCTAC
ATCGAGGCGCTGCCGTCGAGCACGCCGGGCGAGCGCCAGGCACGCTTCCAGACTCTCGCCGAAGCGCCCAAC
CTGCTGGGTCGGGAAAACGGCCTGCGGCTGACCCTCAGTGCGCCGCGCAAGGGCTCGATCAAGCCGGGCAAC
CTGGTGACCTACCGGCAGATCCCGGTGGGCAAGGTCGTCGACCTGGCCTTGGGCGAACAGGCCGACCGGGTG
CTGATCAGCATCCTCATCGAACCGCGCTACGTACCGCTGGTGCGTACCGGCAGCCGTTTCTGGAATGCCAGC
GGCTTCGGCGTCGACGCCAGCCTGTTCAAGGGCCTGTCGCTACGCACCGAGTCGATGGAGGCGCTGATGGAG
GGCGGCATTGCCTTCGCCACCCCGAACAATGCGCAGATGGGCGAGCCCGCCAAGCCGGGGCAGACCTTCGCC
CTGTTCGATTCGGCCAATGACGAATGGCTGGAGTGGGCGCCCAGGATCGCCCTGAGGCGCGGGGCCCGTTGA