ViewGene
Locus Name:
GeneID:
Location:

GeneID:2549
TrivialName: PA14_62510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62510
PAO1 Ortholog Locus:PA4724
Sequence Length:882
Protein Length:293
Start: 5574831
Stop: 5575712
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08110.1|AE004886_2 (AE004886) probable aminoacyl-transfer RNA synthetase (class I) [Pseudomonas aeruginosa PAO1]
Identities = 292/293 (99%), Positives = 292/293 (99%)
Sequence:
ATGACCTCTTCCTATGTAGGCCGCTTCGCCCCGACGCCCAGCGGCTACCTGCACTTCGGTTCCCTGGTGGCG
GCCGTCGCCTCCTACCTGGACGCGCGTGCCGTCGGCGGCCGCTGGCTGGTGCGCATGGAAGACCTCGACCCG
CCCCGCGAAGTCCCGGGCGCCCAGCAGGCGATCCTGGAAACCCTGGAGCGCTACGGCTTCGAATGGGACGGC
GCGGTGGAGCGGCAGAGCGAACGCTTCCCGGCCTACGCCGCAGTGGTCGAGCAACTGCTGCGCAGCGGCCTG
GCCTACGCCTGCACTTGCTCGCGCAAACAGCTTGAGGGATTCGCCGGGATCTACCCAGGCTTCTGCCGCGAC
GCCGGGCACGCCCGCGAGGACGCGGCGATCCGCCTGCGCGTGCCGGAGCTGGAATATCGCTTCGTCGACCGC
GTGCAGGGCGAAGTCCGCCAGCATCTCGGCCGCGAGGTCGGCGATTTCGTCATCCAGCGCCGCGATGGCTTC
TACGCCTACCAACTGGCGGTGGTGCTGGACGACGCCTGGCAGGGCATCACCGACATCGTCCGCGGCGCCGAC
CTGCTCGACTCGACCCCGCGCCAGCTTTACCTCCAGGAACTGCTGGGGTTGAGCCAGCCGCGCTACCTGCAC
GTGCCGCTGATCGTCCAGCCGGACGGGCACAAGCTCGGCAAGTCCTACCGCTCCCCGCCGCTGCCCGCCGAG
CAGGCCGCCGCGCCGCTGACCCGCGCCCTGCGCGCGCTCGGCCAGCGGCCGCCGGCCGAACTGGCCCAGGCC
AGCGCCAGCGAGGCGCTGGCCTGGGGCGTCGCGCACTGGGACGCCACGCGCATCCCGCGCTGCGCTACCCTT
CCCGAGGAACGCCTGTAG
Translation:
MTSSYVGRFAPTPSGYLHFGSLVAAVASYLDARAVGGRWLVRMEDLDPPREVPGAQQAILETLERYGFEWDG
AVERQSERFPAYAAVVEQLLRSGLAYACTCSRKQLEGFAGIYPGFCRDAGHAREDAAIRLRVPELEYRFVDR
VQGEVRQHLGREVGDFVIQRRDGFYAYQLAVVLDDAWQGITDIVRGADLLDSTPRQLYLQELLGLSQPRYLH
VPLIVQPDGHKLGKSYRSPPLPAEQAAAPLTRALRALGQRPPAELAQASASEALAWGVAHWDATRIPRCATL
PEERL*
AnnotationID:2557GeneID:2549
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 16:04:14
Gene Name:
Confidence Code:3
GeneProduct:probable aminoacyl-transfer RNA synthetase (class I)
Cell Localization:(1) Cytoplasmic
Synonyms:PA4724, yadB
Cell Localization Confidence Code:1
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:6.1.1.17
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54501.1| (AE016859) glutamyl-tRNA synthetase-related protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 295

 Score =  466 bits (1198), Expect = e-131
 Identities = 224/290 (77%), Positives = 248/290 (85%)

>gb|AAN70267.1|AE016666_11 (AE016791) tRNA synthetase domain protein [Pseudomonas putida
           KT2440]
          Length = 300

 Score =  447 bits (1149), Expect = e-125
 Identities = 222/291 (76%), Positives = 243/291 (83%)

>gb|AAM41572.1| (AE012337) aminoacyl-tRNA synthetase: glutamyl homolog [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 297

 Score =  271 bits (694), Expect = 3e-72
 Identities = 148/285 (51%), Positives = 188/285 (65%), Gaps = 4/285 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:
other possible gene name: yadB


















    ReferenceID:5101




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22246




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37653




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2549_cdd.html


    		




 
URL:

















    ReferenceID:38138




  
Author/Investigator(s):
        Franklund CV, Goldberg JB.





  
Title:
        Cloning of the glutamyl-tRNA synthetase (gltX) gene from Pseudomonas aeruginosa.




  
PubMed:
        10348873


MedLine:
        




    
Source:
J Bacteriol. 1999 Jun;181(11):3582-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=10348873









           
Homologs By Global Alignment 

           

       



     
Gene ID:2549
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4243
                           PA4724_tr
                           translation of PA4724
                           293
                           99.65
                           99.65
                           0
                           1523.0
     

     
     
124943
                           gb|AAG08110.1|AE004886_2
                           (AE004886) probable aminoacyl-transfer RNA synthetase (class I) [Pseudomonas aeruginosa PAO1]
                           293
                           99.65
                           99.65
                           0
                           1523.0
     

     
     
124944
                           dbj|BAB20865.1|
                           (AB045630) glutamate-tRNA synthetase [Pseudomonas aeruginosa]
                           293
                           99.65
                           99.65
                           0
                           1523.0
     

     
     
124945
                           gb|AAO54501.1|
                           (AE016859) glutamyl-tRNA synthetase-related protein [Pseudomonas syringae pv. tomato str. DC3000]
                           295
                           75.93
                           84.06
                           2
                           1195.0
     

     
     
124946
                           gb|AAN70267.1|AE016666_11
                           (AE016791) tRNA synthetase domain protein [Pseudomonas putida KT2440]
                           300
                           74.66
                           81.66
                           7
                           1149.0
     

     






      

          
GC ORFID: 45551How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4724Glimmer Score: 

          
Start: 4838511Stop: 4839392

          
Length: 882


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4724 translation of PA4724Homolog Bit Score 591.0

          
Other Homologs:  psyr_15may02_Scaffold15_revised_gene2513 (ORF: BLASTX 454.0), t_PA4724 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTCTTCCTATGTAGGCCGCTTCGCCCCGACGCCCAGCGGCTACCTGCACTTCGGTTCCCTGGTGGCG 
GCCGTCGCCTCCTACCTGGACGCGCGTGCCGTCGGCGGCCGCTGGCTGGTGCGCATGGAAGACCTCGACCCG 
CCCCGCGAAGTCCCGGGCGCCCAGCAGGCGATCCTGGAAACCCTGGAGCGCTACGGCTTCGAATGGGACGGC 
GCGGTGGAGCGGCAGAGCGAACGCTTCCCGGCCTACGCCGCAGTGGTCGAGCAACTGCTGCGCAGCGGCCTG 
GCCTACGCCTGCACTTGCTCGCGCAAACAGCTTGAGGGATTCGCCGGGATCTACCCAGGCTTCTGCCGCGAC 
GCCGGGCACGCCCGCGAGGACGCGGCGATCCGCCTGCGCGTGCCGGAGCTGGAATATCGCTTCGTCGACCGC 
GTGCAGGGCGAAGTCCGCCAGCATCTCGGCCGCGAGGTCGGCGATTTCGTCATCCAGCGCCGCGATGGCTTC 
TACGCCTACCAACTGGCGGTGGTGCTGGACGACGCCTGGCAGGGCATCACCGACATCGTCCGCGGCGCCGAC 
CTGCTCGACTCGACCCCGCGCCAGCTTTACCTCCAGGAACTGCTGGGGTTGAGCCAGCCGCGCTACCTGCAC 
GTGCCGCTGATCGTCCAGCCGGACGGGCACAAGCTCGGCAAGTCCTACCGCTCCCCGCCGCTGCCCGCCGAG 
CAGGCCGCCGCGCCGCTGACCCGCGCCCTGCGCGCGCTCGGCCAGCGGCCGCCGGCCGAACTGGCCCAGGCC 
AGCGCCAGCGAGGCGCTGGCCTGGGGCGTCGCGCACTGGGACGCCACGCGCATCCCGCGCTGCGCTACCCTT 
CCCGAGGAACGCCTGTAG